2 <head><title>Home Page</title></head>
5 <IMG src="align.jpg"><font size="4">
7 <strong>Jalview Documentation</strong></font>
9 Jalview (2004) is a fast Java multiple alignment editor and analysis tool. It
10 features many of the functions of <a href="http://www.compbio.dundee.ac.uk/Software/Amas/amas.html">AMAS</a>,
11 for the analysis of sub-families and the prediction of functional sites, but is
12 fully interactive. (View the <a href="http://www.jalview.org">Jalview homepage</a>).
14 <p> If you use Jalview in your work, please cite the bioinformatics paper: </p>
15 <p>Clamp, M., Cuff, J., Searle, S. M. and Barton, G. J. (2004), "The Jalview
16 Java Alignment Editor", Bioinformatics, 20, 426-7.</p>