3 * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
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23 <title>Viewing and exporting sequence annotation reports</title>
27 <strong>Viewing and exporting sequence annotation reports</strong> <br />
28 Much of the information retrieved by Jalview about a sequence is
29 visualized on the alignment. Often, however, there are a huge number
30 of ontology terms, cross-references, links to publications and other
31 kinds of data shown in the sequence ID tooltip that cannot be
32 examined. In this case, you can view and export the information
33 shown in a sequence's ID tooltip by right-clicking and selecting the
34 <strong>"<em>(sequence's name)</em></em>→Sequence
36 </strong> entry from the <a href="../menus/popupMenu.html">pop-up menu</a>.
39 <strong>Annotation Reports for a range of sequences</strong><br />
40 If you would like to view the tooltips for a number of sequences,
41 simply select them all and then use the <strong>Selection→Sequence
42 Details ...</strong> entry in the <a href="../menus/popupMenu.html">pop-up
45 <img src="seqreport.gif"
46 alt="Sequence Annotation is displayed as HTML in a report window" />
48 <strong>Copying and pasting annotation to other programs</strong><br>
49 The <strong>File→Save</strong> option in the sequence
50 annotation report window allows the report to be saved as HTML,
51 which will preserve links and any other metadata. It is also
52 possible to copy and paste the text to other programs, but in some
53 cases, the HTML will not be preserved. In that case, you can toggle
54 the display of HTML source code with the <strong>Edit→Show
55 HTML Source</strong> drop down menu entry.