3 * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
4 * Copyright (C) $$Year-Rel$$ The Jalview Authors
6 * This file is part of Jalview.
8 * Jalview is free software: you can redistribute it and/or
9 * modify it under the terms of the GNU General Public License
10 * as published by the Free Software Foundation, either version 3
11 * of the License, or (at your option) any later version.
13 * Jalview is distributed in the hope that it will be useful, but
14 * WITHOUT ANY WARRANTY; without even the implied warranty
15 * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
16 * PURPOSE. See the GNU General Public License for more details.
18 * You should have received a copy of the GNU General Public License
19 * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
20 * The Jalview Authors are detailed in the 'AUTHORS' file.
23 <p><strong>Alignment Window Select Menu</strong></p>
26 <li><a href="../features/search.html"><strong>Find... (Control F)</strong></a><br>
27 <em>Opens the Find dialog box to search for residues, sequence name or residue
28 position within the alignment and create new sequence features from the queries.
30 <li><strong>Select All (Control A)</strong><strong><br>
31 </strong><em>Selects all the sequences and residues in the alignment. <br>
32 Use <CTRL> and A (<APPLE> and A on a MacOSX) to select all.</em></em></li>
33 <li><strong>Deselect All (Escape)<br>
34 </strong><em>Removes the current selection box (red dashed box) from the
35 alignment window. All selected sequences, residues and marked columns
36 will be deselected. </em><em> <br>
37 Use <ESCAPE> to deselect all.</em></li>
38 <li><strong>Invert Sequence Selection (Control I)<br>
39 </strong><em>Any sequence ids currently not selected will replace the
40 current selection. </em></li>
41 <li><strong>Invert Column Selection (Control Alt I)<br>
42 </strong><em>Any columns currently not selected will replace the current
43 column selection. </em></li>
44 <li><strong>Create Group (Control G)<br></strong>
45 <em>Create a group containing the currently selected sequences.</em></li>
46 <li><strong>Remove Group (Shift Control G)<br></strong>
47 <em>Ungroup the currently selected sequence group. (Create/Remove group new in Jalview 2.8.1)</em></li>
48 <li><strong>Make Groups for selection<br /></strong> <em>The
49 currently selected groups of the alignment will be subdivided
50 according to the contents of the currently selected region. <br />Use
51 this to subdivide an alignment based on the different combinations
52 of residues at marked columns. (since Jalview 2.8.3)
54 <li><strong>Undefine Groups (Control U)<br>
55 </strong><em>The alignment will be reset with no defined groups.<br>
56 <strong>WARNING</strong>: This cannot be undone.</em></li>