3 * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
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16 * PURPOSE. See the GNU General Public License for more details.
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20 * The Jalview Authors are detailed in the 'AUTHORS' file.
23 <title>Alignment Window Menus</title>
27 <p><strong>Alignment Window View Menu</strong></p>
29 <li><strong>New View (Control T)</strong><em><br>
30 Creates a new view from the current alignment view. </em></li>
31 <li><strong>Expand Views (X)</strong><em><br>
32 Display each view associated with the alignment in its own alignment window,
33 allowing several views to be displayed simultaneously. </em></li>
34 <li><strong>Gather Views (G)</strong><em><br>
35 Each view associated with the alignment will be displayed within its own tab
36 on the current alignment window. </em></li>
37 <li><strong>Show→(all Columns / Sequences / Sequences and Columns</strong> )</strong><em><br>
38 All hidden Columns / Sequences / Sequences and Columns will be revealed. </em></li>
39 <li><strong>Hide→(all Columns / Sequences / Selected Region / All but Selected Region)</strong><em><br>
40 Hides the currently selected Columns / Sequences / Region or everything but the selected Region.</em></li>
41 <li><strong>Automatic Scrolling<br>
42 </strong><em>When selected, the view will automatically scroll to display the
43 highlighted sequence position corresponding to the position under the mouse
44 pointer in a linked alignment or structure view.</em>
46 <li><strong>Show Sequence Features</strong><br>
47 <em>Show or hide sequence features on this alignment.</em></li>
48 <li><strong><a href="../features/featuresettings.html">Sequence Feature Settings...</a></strong><em><br>
49 Opens the Sequence Feature Settings dialog box to control the colour and display
50 of sequence features on the alignment, and configure and retrieve features
51 from DAS annotation servers.</em></li>
52 <li><strong>Sequence ID Tooltip</strong><em> (application only)
53 <br>This submenu's options allow the inclusion or exclusion of
54 non-positional sequence features or database cross references
55 from the tooltip shown when the mouse hovers over the sequence ID panel.</em></li>
56 <li><strong>Alignment Properties...<br>
57 </strong><em>Displays some simple statistics computed for the
58 current alignment view and any named properties defined on the
59 whole alignment.</em></li>
60 <li><strong><a href="../features/overview.html">Overview Window</a><br>
61 </strong><em>A scaled version of the alignment will be displayed in a small
62 window. A red box will indicate the currently visible area of the alignment.
63 Move the visible region using the mouse. </em></li>