2 <head><title>Desktop Menu</title></head>
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5 <p><strong>Desktop Menu</strong></p>
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7 <li><strong>File</strong><em> </em>
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9 <li><strong>Input Alignment from</strong><em> (See more on <a href="../io/index.html">file
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12 <li><strong>File</strong><br>
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13 <em>open file(s) on your local file system</em></li>
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14 <li><strong>URL</strong><br>
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15 <em>open a file from a website. The URL MUST start with http://</em></li>
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16 <li><strong>Textbox</strong><br>
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17 <em>copy and paste an alignment into a text window</em></li>
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20 <li><strong>Save Project</strong><br>
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21 <em>Saves all currently open alignment windows with their current visible
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22 settings as a Jalview File, with the .jar extension. Each alignment will
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23 also save the currently active tree associated with the window, if one
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25 <li><strong>Load Project</strong><br>
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26 <em>Loads Jalview file formatted alignments only. </em></li>
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27 <li><strong>Quit</strong><br>
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28 <em>Close Jalview. Warning - any annotations you have made on alignments
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29 will be lost unless you Save your work before quitting.</em><br>
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33 <li><strong>Tools </strong>
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35 <li><strong><a href="../features/preferences.html">Preferences<br>
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36 </a></strong><em>Change the default visual settings for opening new alignment
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37 windows.</em><strong><br>
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41 <li><strong>Help </strong>
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43 <li><strong>About, </strong></li>
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44 <li><strong>Documentation<br>
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48 <li><strong>Window</strong></li>
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