2 <head><title>Popup Menu</title></head>
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5 <p><strong>Popup Menu</strong><br>
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6 <em>This menu is visible when right clicking either within a selected region
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7 on the alignment or on a selected sequence name.</em></p>
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9 <li><strong>Define </strong>
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11 <li><strong>Group<br>
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12 </strong><em>This will display a window asking for the name of the currently
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13 selected group. Click OK to set the name, cancel to use the default group
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14 name. </em><strong><br>
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16 <li><strong>Remove Group<br>
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17 </strong><em>This will undefine the selected group. </em><strong> <br>
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19 <li><strong>Group Colour<br>
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20 </strong><em>Sets the <a href="../colourSchemes/index.html">colour</a>
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21 of the group.</em><strong> <br>
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23 <li><strong>Boxes<br>
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24 </strong><em>If selected the background of a residue within the selected
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25 group will be coloured according to the assigned colour scheme.</em><strong>
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28 <li><strong> Text<br>
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29 </strong><em>If selected the selected group will display text. </em><strong><br>
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31 <li><strong>Colour Text<br>
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32 </strong><em>If selected the selected group will display text in a colour
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33 slightly darker than the background colour of that residue.</em><strong><br>
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35 <li><strong>Border Colour <br>
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36 </strong><em>Selecting this will display a "Colour Chooser"
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37 window. Select a colour than press OK to set the border colour of a group.</em><strong><br>
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41 <li><strong>Sequence <br>
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42 </strong><em>This menu is only visible if you right-click on a sequence name.
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45 <li><strong>Edit Name<br>
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46 </strong><em>You may edit the name of each sequence. A window will be
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47 displayed asking for a new sequence name to be entered. Press OK to accept
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48 your edit.</em><strong><br>
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50 <li><strong>View PDB Structure<br>
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51 </strong><em>In the current version you will first need to select "View
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52 -> Sequence Features" before associating a PDB file with a sequence.
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54 If the sequence has a PDB file associated with it Jalview will display
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55 a 3D interactive viewer of the file.</em></li>
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58 <li><strong><em>Link</em></strong><br>
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59 <em>This menu item lists all links which have been set up in the <a href="../features/preferences.html">Preferences</a>
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60 Connections tab. It is only displayed when you right click (Apple click) on
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61 a sequence id. </em><strong><br>
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