Merge branch 'docs/2_8_1_Release' into Release_2_8_1_Branch
[jalview.git] / help / html / misc / aminoAcids.html
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20 <head><title>Amino Acids</title>
21 <style type="text/css">
22 <!--
23 td {
24         text-align: center;
25         background-color: FFFFEE;
26 }
27 -->
28 </style>
29 </head>
30
31 <body>
32
33
34 <div align="center">
35   <table width="450" BORDER ="1" cellpadding="3" BGCOLOR="#FFFFFF">
36     <tr> 
37       <td width="15">A</td>
38       <td width="25">Ala</td>
39       <td width="90">Alanine</td>
40       <td width="80">aliphatic<br>
41         hydrophobic<br>
42         neutral </td>
43       <td width="43" valign="middle">GCT<br>
44         GCC<br>
45         GCA<br>
46         GCG</td>
47       <td width="125"><img src="ala.jpg" width="94" height="81"></td>
48     </tr>
49     <tr> 
50       <td>B</td>
51       <td>&nbsp;</td>
52       <td>either aspartic acid or asparagine</td>
53       <td>&nbsp;</td>
54       <td>&nbsp;</td>
55       <td>&nbsp;</td>
56     </tr>
57     <tr> 
58       <td>C</td>
59       <td>Cys</td>
60       <td>Cysteine</td>
61       <td>polar<br>
62         hydrophobic<br>
63         neutral </td>
64       <td>TGT<br>
65         TGC</td>
66       <td><img src="cys.jpg" width="82" height="95"></td>
67     </tr>
68     <tr> 
69       <td>D</td>
70       <td>Asp</td>
71       <td>Aspartic Acid</td>
72       <td>polar<br>
73         hydrophilic<br>
74         charged (-) </td>
75       <td>GAT<br>
76         GAC</td>
77       <td><img src="aspartate.jpg" width="95" height="103"></td>
78     </tr>
79     <tr> 
80       <td>E</td>
81       <td>Glu</td>
82       <td>Glutamic Acid</td>
83       <td>polar<br>
84         hydrophilic<br>
85         charged (-) </td>
86       <td>GAA<br>
87         GAG</td>
88       <td><img src="glutamate.jpg" width="93" height="128"></td>
89     </tr>
90     <tr> 
91       <td>F</td>
92       <td>Phe</td>
93       <td>Phenylalanine</td>
94       <td>aromatic<br>
95         hydrophobic<br>
96         neutral</td>
97       <td>TTT<br>
98         TTC</td>
99       <td><img src="phe.jpg" width="87" height="134"></td>
100     </tr>
101     <tr> 
102       <td>G</td>
103       <td>Gly</td>
104       <td>Glycine</td>
105       <td>&nbsp;</td>
106       <td>GGT<br>
107         GGC<br>
108         GGA<br>
109         GGG</td>
110       <td><img src="gly.jpg" width="97" height="79"></td>
111     </tr>
112     <tr> 
113       <td>H</td>
114       <td>His</td>
115       <td>Histidine</td>
116       <td>aromatic<br>
117         polar<br>
118         hydrophilic<br>
119         charged (+) </td>
120       <td>CAT<br>
121         CAC</td>
122       <td><img src="his.jpg" width="97" height="142"></td>
123     </tr>
124     <tr> 
125       <td>I</td>
126       <td>Ile</td>
127       <td>Isoleucine</td>
128       <td>aliphatic<br>
129         hydrophobic<br>
130         neutral </td>
131       <td>ATT<br>
132         ATC<br>
133         ATA</td>
134       <td><img src="iso.jpg" width="101" height="125"></td>
135     </tr>
136     <tr> 
137       <td>K</td>
138       <td>Lys</td>
139       <td>Lysine</td>
140       <td>&nbsp;</td>
141       <td>AAA<br>
142         AAG</td>
143       <td><img src="lys.jpg" width="79" height="167"></td>
144     </tr>
145     <tr> 
146       <td>L</td>
147       <td>Leu</td>
148       <td>Leucine</td>
149       <td>aliphatic<br>
150         hydrophobic<br>
151         neutral </td>
152       <td>TTG<br>
153         TTA<br>
154         CTT<br>
155         CTC<br>
156         CTA<br>
157         CTG</td>
158       <td><img src="leu.jpg" width="97" height="120"></td>
159     </tr>
160     <tr> 
161       <td>M</td>
162       <td>Met</td>
163       <td>Methionine</td>
164       <td>hydrophobic<br>
165         neutral </td>
166       <td>ATG</td>
167       <td><img src="met.jpg" width="86" height="151"></td>
168     </tr>
169     <tr> 
170       <td>N</td>
171       <td>Asn</td>
172       <td>Asparagine</td>
173       <td>polar<br>
174         hydrophilic<br>
175         neutral </td>
176       <td>AAT<br>
177         AAC</td>
178       <td><img src="asparagine.jpg" width="84" height="116"></td>
179     </tr>
180     <tr> 
181       <td>P</td>
182       <td>Pro</td>
183       <td>Proline</td>
184       <td>hydrophobic<br>
185         neutral</td>
186       <td>CCT<br>
187         CCC<br>
188         CCA<br>
189         CCG</td>
190       <td><img src="pro.jpg" width="101" height="90"></td>
191     </tr>
192     <tr> 
193       <td>Q</td>
194       <td>Gln</td>
195       <td>Glutamine</td>
196       <td>polar<br>
197         hydrophilic<br>
198         neutral</td>
199       <td>CAA<br>
200         CAG</td>
201       <td><img src="glutamine.jpg" width="81" height="137"></td>
202     </tr>
203     <tr> 
204       <td>R</td>
205       <td>Arg</td>
206       <td>Arginine</td>
207       <td>polar<br>
208         hydrophilic<br>
209         charged (+) </td>
210       <td>CGT<br>
211         CGC<br>
212         CGA<br>
213         CGG<br>
214         AGA<br>
215         AGG</td>
216       <td><img src="arg.jpg" width="95" height="187"></td>
217     </tr>
218     <tr> 
219       <td>S</td>
220       <td>Ser</td>
221       <td>Serine</td>
222       <td>polar<br>
223         hydrophilic<br>
224         neutral </td>
225       <td>TCT<br>
226         TCC<br>
227         TCA<br>
228         TCG<br>
229         AGT<br>
230         AGC</td>
231       <td><img src="ser.jpg" width="96" height="74"></td>
232     </tr>
233     <tr> 
234       <td>T</td>
235       <td>Thr</td>
236       <td>Threonine</td>
237       <td>polar<br>
238         hydrophilic<br>
239         neutral </td>
240       <td>ACT<br>
241         ACC<br>
242         ACA<br>
243         ACG</td>
244       <td><img src="thr.jpg" width="94" height="96"></td>
245     </tr>
246     <tr> 
247       <td>V</td>
248       <td>Val</td>
249       <td>Valine</td>
250       <td>aliphatic<br>
251         hydrophobic<br>
252         neutral </td>
253       <td>GTT<br>
254         GTC<br>
255         GTA<br>
256         GTG</td>
257       <td><img src="val.jpg" width="99" height="98"></td>
258     </tr>
259     <tr> 
260       <td>W</td>
261       <td>Trp</td>
262       <td>Tryptophan</td>
263       <td>aromatic<br>
264         hydrophobic<br>
265         neutral</td>
266       <td>TGG</td>
267       <td><img src="tryp.jpg" width="106" height="173"></td>
268     </tr>
269     <tr> 
270       <td>X</td>
271       <td>&nbsp;</td>
272       <td>UNKNOWN</td>
273       <td>&nbsp;</td>
274       <td>&nbsp;</td>
275       <td>&nbsp;</td>
276     </tr>
277     <tr> 
278       <td>Y</td>
279       <td>Tyr</td>
280       <td>Tyrosine</td>
281       <td>aromatic<br>
282         polar<br>
283         hydrophobic </td>
284       <td>TAT<br>
285         TAC</td>
286       <td><img src="tyr.jpg" width="85" height="152"></td>
287     </tr>
288     <tr> 
289       <td>Z</td>
290       <td>&nbsp;</td>
291       <td>either glutamic acid or glutamine</td>
292       <td>&nbsp;</td>
293       <td>&nbsp;</td>
294       <td>&nbsp;</td>
295     </tr>
296     <tr> 
297       <td>&nbsp;</td>
298       <td>End</td>
299       <td>Terminator</td>
300       <td>&nbsp;</td>
301       <td>TAA<br>
302         TAG<br>
303         TGA</td>
304       <td>&nbsp;</td>
305     </tr>
306   </table>
307   </div>
308 </body>
309 </html>