help/html/misc/aminoAcids.html

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  20  * Jalview - A Sequence Alignment Editor and Viewer (Version 2.5)
  21  * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
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  23  * This file is part of Jalview.
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  26  * modify it under the terms of the GNU General Public License
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  36 <head><title>Amino Acids</title>
  37 <style type="text/css">
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  44 </style>
  45 </head>
  46
  47 <body>
  48
  49
  50 <div align="center">
  51   <table width="450" BORDER ="1" cellpadding="3" BGCOLOR="#FFFFFF">
  52     <tr>
  53       <td width="15">A</td>
  54       <td width="25">Ala</td>
  55       <td width="90">Alanine</td>
  56       <td width="80">aliphatic<br>
  57         hydrophobic<br>
  58         neutral </td>
  59       <td width="43" valign="middle">GCT<br>
  60         GCC<br>
  61         GCA<br>
  62         GCG</td>
  63       <td width="125"><img src="ala.jpg" width="94" height="81"></td>
  64     </tr>
  65     <tr>
  66       <td>B</td>
  67       <td>&nbsp;</td>
  68       <td>either aspartic acid or asparagine</td>
  69       <td>&nbsp;</td>
  70       <td>&nbsp;</td>
  71       <td>&nbsp;</td>
  72     </tr>
  73     <tr>
  74       <td>C</td>
  75       <td>Cys</td>
  76       <td>Cysteine</td>
  77       <td>polar<br>
  78         hydrophobic<br>
  79         neutral </td>
  80       <td>TGT<br>
  81         TGC</td>
  82       <td><img src="cys.jpg" width="82" height="95"></td>
  83     </tr>
  84     <tr>
  85       <td>D</td>
  86       <td>Asp</td>
  87       <td>Aspartic Acid</td>
  88       <td>polar<br>
  89         hydrophilic<br>
  90         charged (-) </td>
  91       <td>GAT<br>
  92         GAC</td>
  93       <td><img src="aspartate.jpg" width="95" height="103"></td>
  94     </tr>
  95     <tr>
  96       <td>E</td>
  97       <td>Glu</td>
  98       <td>Glutamic Acid</td>
  99       <td>polar<br>
 100         hydrophilic<br>
 101         charged (-) </td>
 102       <td>GAA<br>
 103         GAG</td>
 104       <td><img src="glutamate.jpg" width="93" height="128"></td>
 105     </tr>
 106     <tr>
 107       <td>F</td>
 108       <td>Phe</td>
 109       <td>Phenylalanine</td>
 110       <td>aromatic<br>
 111         hydrophobic<br>
 112         neutral</td>
 113       <td>TTT<br>
 114         TTC</td>
 115       <td><img src="phe.jpg" width="87" height="134"></td>
 116     </tr>
 117     <tr>
 118       <td>G</td>
 119       <td>Gly</td>
 120       <td>Glycine</td>
 121       <td>&nbsp;</td>
 122       <td>GGT<br>
 123         GGC<br>
 124         GGA<br>
 125         GGG</td>
 126       <td><img src="gly.jpg" width="97" height="79"></td>
 127     </tr>
 128     <tr>
 129       <td>H</td>
 130       <td>His</td>
 131       <td>Histidine</td>
 132       <td>aromatic<br>
 133         polar<br>
 134         hydrophilic<br>
 135         charged (+) </td>
 136       <td>CAT<br>
 137         CAC</td>
 138       <td><img src="his.jpg" width="97" height="142"></td>
 139     </tr>
 140     <tr>
 141       <td>I</td>
 142       <td>Ile</td>
 143       <td>Isoleucine</td>
 144       <td>aliphatic<br>
 145         hydrophobic<br>
 146         neutral </td>
 147       <td>ATT<br>
 148         ATC<br>
 149         ATA</td>
 150       <td><img src="iso.jpg" width="101" height="125"></td>
 151     </tr>
 152     <tr>
 153       <td>K</td>
 154       <td>Lys</td>
 155       <td>Lysine</td>
 156       <td>&nbsp;</td>
 157       <td>AAA<br>
 158         AAG</td>
 159       <td><img src="lys.jpg" width="79" height="167"></td>
 160     </tr>
 161     <tr>
 162       <td>L</td>
 163       <td>Leu</td>
 164       <td>Leucine</td>
 165       <td>aliphatic<br>
 166         hydrophobic<br>
 167         neutral </td>
 168       <td>TTG<br>
 169         TTA<br>
 170         CTT<br>
 171         CTC<br>
 172         CTA<br>
 173         CTG</td>
 174       <td><img src="leu.jpg" width="97" height="120"></td>
 175     </tr>
 176     <tr>
 177       <td>M</td>
 178       <td>Met</td>
 179       <td>Methionine</td>
 180       <td>hydrophobic<br>
 181         neutral </td>
 182       <td>ATG</td>
 183       <td><img src="met.jpg" width="86" height="151"></td>
 184     </tr>
 185     <tr>
 186       <td>N</td>
 187       <td>Asn</td>
 188       <td>Asparagine</td>
 189       <td>polar<br>
 190         hydrophilic<br>
 191         neutral </td>
 192       <td>AAT<br>
 193         AAC</td>
 194       <td><img src="asparagine.jpg" width="84" height="116"></td>
 195     </tr>
 196     <tr>
 197       <td>P</td>
 198       <td>Pro</td>
 199       <td>Proline</td>
 200       <td>hydrophobic<br>
 201         neutral</td>
 202       <td>CCT<br>
 203         CCC<br>
 204         CCA<br>
 205         CCG</td>
 206       <td><img src="pro.jpg" width="101" height="90"></td>
 207     </tr>
 208     <tr>
 209       <td>Q</td>
 210       <td>Gln</td>
 211       <td>Glutamine</td>
 212       <td>polar<br>
 213         hydrophilic<br>
 214         neutral</td>
 215       <td>CAA<br>
 216         CAG</td>
 217       <td><img src="glutamine.jpg" width="81" height="137"></td>
 218     </tr>
 219     <tr>
 220       <td>R</td>
 221       <td>Arg</td>
 222       <td>Arginine</td>
 223       <td>polar<br>
 224         hydrophilic<br>
 225         charged (+) </td>
 226       <td>CGT<br>
 227         CGC<br>
 228         CGA<br>
 229         CGG<br>
 230         AGA<br>
 231         AGG</td>
 232       <td><img src="arg.jpg" width="95" height="187"></td>
 233     </tr>
 234     <tr>
 235       <td>S</td>
 236       <td>Ser</td>
 237       <td>Serine</td>
 238       <td>polar<br>
 239         hydrophilic<br>
 240         neutral </td>
 241       <td>TCT<br>
 242         TCC<br>
 243         TCA<br>
 244         TCG<br>
 245         AGT<br>
 246         AGC</td>
 247       <td><img src="ser.jpg" width="96" height="74"></td>
 248     </tr>
 249     <tr>
 250       <td>T</td>
 251       <td>Thr</td>
 252       <td>Threonine</td>
 253       <td>polar<br>
 254         hydrophilic<br>
 255         neutral </td>
 256       <td>ACT<br>
 257         ACC<br>
 258         ACA<br>
 259         ACG</td>
 260       <td><img src="thr.jpg" width="94" height="96"></td>
 261     </tr>
 262     <tr>
 263       <td>V</td>
 264       <td>Val</td>
 265       <td>Valine</td>
 266       <td>aliphatic<br>
 267         hydrophobic<br>
 268         neutral </td>
 269       <td>GTT<br>
 270         GTC<br>
 271         GTA<br>
 272         GTG</td>
 273       <td><img src="val.jpg" width="99" height="98"></td>
 274     </tr>
 275     <tr>
 276       <td>W</td>
 277       <td>Trp</td>
 278       <td>Tryptophan</td>
 279       <td>aromatic<br>
 280         hydrophobic<br>
 281         neutral</td>
 282       <td>TGG</td>
 283       <td><img src="tryp.jpg" width="106" height="173"></td>
 284     </tr>
 285     <tr>
 286       <td>X</td>
 287       <td>&nbsp;</td>
 288       <td>UNKNOWN</td>
 289       <td>&nbsp;</td>
 290       <td>&nbsp;</td>
 291       <td>&nbsp;</td>
 292     </tr>
 293     <tr>
 294       <td>Y</td>
 295       <td>Tyr</td>
 296       <td>Tyrosine</td>
 297       <td>aromatic<br>
 298         polar<br>
 299         hydrophobic </td>
 300       <td>TAT<br>
 301         TAC</td>
 302       <td><img src="tyr.jpg" width="85" height="152"></td>
 303     </tr>
 304     <tr>
 305       <td>Z</td>
 306       <td>&nbsp;</td>
 307       <td>either glutamic acid or glutamine</td>
 308       <td>&nbsp;</td>
 309       <td>&nbsp;</td>
 310       <td>&nbsp;</td>
 311     </tr>
 312     <tr>
 313       <td>&nbsp;</td>
 314       <td>End</td>
 315       <td>Terminator</td>
 316       <td>&nbsp;</td>
 317       <td>TAA<br>
 318         TAG<br>
 319         TGA</td>
 320       <td>&nbsp;</td>
 321     </tr>
 322   </table>
 323   </div>
 324 </body>
 325 </html>