9e25c35d4427590dd172f0f7e8d869066c209854
[jalview.git] / help / html / misc / aminoAcids.html
1 <html>\r
2 <head><title>Amino Acids</title>\r
3 <style type="text/css">\r
4 <!--\r
5 td {\r
6         text-align: center;\r
7         background-color: FFFFEE;\r
8 }\r
9 -->\r
10 </style>\r
11 </head>\r
12 \r
13 <body>\r
14 \r
15 \r
16 <div align="center">\r
17   <h2><br>\r
18   </h2>\r
19   <table width="450" BORDER ="5" cellpadding="3" BGCOLOR="#FFFFFF">\r
20     <tr> \r
21       <td width="15">A</td>\r
22       <td width="25">Ala</td>\r
23       <td width="90">Alanine</td>\r
24       <td width="80">aliphatic<br>\r
25         hydrophobic<br>\r
26         neutral </td>\r
27       <td width="43" valign="middle">GCT<br>\r
28         GCC<br>\r
29         GCA<br>\r
30         GCG</td>\r
31       <td width="125"><img src="alachem.gif" width="102" height="61"></td>\r
32     </tr>\r
33     <tr> \r
34       <td>B</td>\r
35       <td>&nbsp;</td>\r
36       <td>either aspartic acid or asparagine</td>\r
37       <td>&nbsp;</td>\r
38       <td>&nbsp;</td>\r
39       <td>&nbsp;</td>\r
40     </tr>\r
41     <tr> \r
42       <td>C</td>\r
43       <td>Cys</td>\r
44       <td>Cysteine</td>\r
45       <td>polar<br>\r
46         hydrophobic<br>\r
47         neutral </td>\r
48       <td>TGT<br>\r
49         TGC</td>\r
50       <td><img src="cyschem.gif" width="102" height="81"></td>\r
51     </tr>\r
52     <tr> \r
53       <td>D</td>\r
54       <td>Asp</td>\r
55       <td>Aspartic Acid</td>\r
56       <td>polar<br>\r
57         hydrophilic<br>\r
58         charged (-) </td>\r
59       <td>GAT<br>\r
60         GAC</td>\r
61       <td><img src="aspchem.gif" width="102" height="104"></td>\r
62     </tr>\r
63     <tr> \r
64       <td>E</td>\r
65       <td>Glu</td>\r
66       <td>Glutamic Acid</td>\r
67       <td>polar<br>\r
68         hydrophilic<br>\r
69         charged (-) </td>\r
70       <td>GAA<br>\r
71         GAG</td>\r
72       <td><img src="gluchem.gif" width="102" height="127"></td>\r
73     </tr>\r
74     <tr> \r
75       <td>F</td>\r
76       <td>Phe</td>\r
77       <td>Phenylalanine</td>\r
78       <td>aromatic<br>\r
79         hydrophobic<br>\r
80         neutral</td>\r
81       <td>TTT<br>\r
82         TTC</td>\r
83       <td><img src="phechem.gif" width="102" height="125"></td>\r
84     </tr>\r
85     <tr> \r
86       <td>G</td>\r
87       <td>Gly</td>\r
88       <td>Glycine</td>\r
89       <td>&nbsp;</td>\r
90       <td>GGT<br>\r
91         GGC<br>\r
92         GGA<br>\r
93         GGG</td>\r
94       <td><img src="glychem.gif" width="102" height="58"></td>\r
95     </tr>\r
96     <tr> \r
97       <td>H</td>\r
98       <td>His</td>\r
99       <td>Histidine</td>\r
100       <td>aromatic<br>\r
101         polar<br>\r
102         hydrophilic<br>\r
103         charged (+) </td>\r
104       <td>CAT<br>\r
105         CAC</td>\r
106       <td><img src="hischem.gif" width="102" height="116"></td>\r
107     </tr>\r
108     <tr> \r
109       <td>I</td>\r
110       <td>Ile</td>\r
111       <td>Isoleucine</td>\r
112       <td>aliphatic<br>\r
113         hydrophobic<br>\r
114         neutral </td>\r
115       <td>ATT<br>\r
116         ATC<br>\r
117         ATA</td>\r
118       <td><img src="ilechem.gif" width="102" height="106"></td>\r
119     </tr>\r
120     <tr> \r
121       <td>K</td>\r
122       <td>Lys</td>\r
123       <td>Lysine</td>\r
124       <td>&nbsp;</td>\r
125       <td>AAA<br>\r
126         AAG</td>\r
127       <td><img src="lyschem.gif" width="102" height="152"></td>\r
128     </tr>\r
129     <tr> \r
130       <td>L</td>\r
131       <td>Leu</td>\r
132       <td>Leucine</td>\r
133       <td>aliphatic<br>\r
134         hydrophobic<br>\r
135         neutral </td>\r
136       <td>TTG<br>\r
137         TTA<br>\r
138         CTT<br>\r
139         CTC<br>\r
140         CTA<br>\r
141         CTG</td>\r
142       <td><img src="leuchem.gif" width="102" height="107"></td>\r
143     </tr>\r
144     <tr> \r
145       <td>M</td>\r
146       <td>Met</td>\r
147       <td>Methionine</td>\r
148       <td>hydrophobic<br>\r
149         neutral </td>\r
150       <td>ATG</td>\r
151       <td><img src="metchem.gif" width="102" height="130"></td>\r
152     </tr>\r
153     <tr> \r
154       <td>N</td>\r
155       <td>Asn</td>\r
156       <td>Asparagine</td>\r
157       <td>polar<br>\r
158         hydrophilic<br>\r
159         neutral </td>\r
160       <td>AAT<br>\r
161         AAC</td>\r
162       <td><img src="asnchem.gif" width="102" height="106"></td>\r
163     </tr>\r
164     <tr> \r
165       <td>P</td>\r
166       <td>Pro</td>\r
167       <td>Proline</td>\r
168       <td>hydrophobic<br>\r
169         neutral</td>\r
170       <td>CCT<br>\r
171         CCC<br>\r
172         CCA<br>\r
173         CCG</td>\r
174       <td><img src="prochem.gif" width="65" height="93"></td>\r
175     </tr>\r
176     <tr> \r
177       <td>Q</td>\r
178       <td>Gln</td>\r
179       <td>Glutamine</td>\r
180       <td>polar<br>\r
181         hydrophilic<br>\r
182         neutral</td>\r
183       <td>CAA<br>\r
184         CAG</td>\r
185       <td><img src="gluchem.gif" width="102" height="127"></td>\r
186     </tr>\r
187     <tr> \r
188       <td>R</td>\r
189       <td>Arg</td>\r
190       <td>Arginine</td>\r
191       <td>polar<br>\r
192         hydrophilic<br>\r
193         charged (+) </td>\r
194       <td>CGT<br>\r
195         CGC<br>\r
196         CGA<br>\r
197         CGG<br>\r
198         AGA<br>\r
199         AGG</td>\r
200       <td><img src="argchem.gif" width="102" height="175"></td>\r
201     </tr>\r
202     <tr> \r
203       <td>S</td>\r
204       <td>Ser</td>\r
205       <td>Serine</td>\r
206       <td>polar<br>\r
207         hydrophilic<br>\r
208         neutral </td>\r
209       <td>TCT<br>\r
210         TCC<br>\r
211         TCA<br>\r
212         TCG<br>\r
213         AGT<br>\r
214         AGC</td>\r
215       <td><img src="serchem.gif" width="102" height="81"></td>\r
216     </tr>\r
217     <tr> \r
218       <td>T</td>\r
219       <td>Thr</td>\r
220       <td>Threonine</td>\r
221       <td>polar<br>\r
222         hydrophilic<br>\r
223         neutral </td>\r
224       <td>ACT<br>\r
225         ACC<br>\r
226         ACA<br>\r
227         ACG</td>\r
228       <td><img src="thrchem.gif" width="102" height="84"></td>\r
229     </tr>\r
230     <tr> \r
231       <td>V</td>\r
232       <td>Val</td>\r
233       <td>Valine</td>\r
234       <td>aliphatic<br>\r
235         hydrophobic<br>\r
236         neutral </td>\r
237       <td>GTT<br>\r
238         GTC<br>\r
239         GTA<br>\r
240         GTG</td>\r
241       <td><img src="valchem.gif" width="102" height="84"></td>\r
242     </tr>\r
243     <tr> \r
244       <td>W</td>\r
245       <td>Trp</td>\r
246       <td>Tryptophan</td>\r
247       <td>aromatic<br>\r
248         hydrophobic<br>\r
249         neutral</td>\r
250       <td>TGG</td>\r
251       <td><img src="trpchem.gif" width="125" height="125"></td>\r
252     </tr>\r
253     <tr> \r
254       <td>X</td>\r
255       <td>&nbsp;</td>\r
256       <td>UNKNOWN</td>\r
257       <td>&nbsp;</td>\r
258       <td>&nbsp;</td>\r
259       <td>&nbsp;</td>\r
260     </tr>\r
261     <tr> \r
262       <td>Y</td>\r
263       <td>Tyr</td>\r
264       <td>Tyrosine</td>\r
265       <td>aromatic<br>\r
266         polar<br>\r
267         hydrophobic </td>\r
268       <td>TAT<br>\r
269         TAC</td>\r
270       <td><img src="tyrchem.gif" width="102" height="149"></td>\r
271     </tr>\r
272     <tr> \r
273       <td>Z</td>\r
274       <td>&nbsp;</td>\r
275       <td>either glutamic acid or glutamine</td>\r
276       <td>&nbsp;</td>\r
277       <td>&nbsp;</td>\r
278       <td><img src="glnchem.gif" width="102" height="130"></td>\r
279     </tr>\r
280     <tr> \r
281       <td>&nbsp;</td>\r
282       <td>End</td>\r
283       <td>Terminator</td>\r
284       <td>&nbsp;</td>\r
285       <td>TAA<br>\r
286         TAG<br>\r
287         TGA</td>\r
288       <td>&nbsp;</td>\r
289     </tr>\r
290   </table>\r
291   <h2><br>\r
292   </h2>\r
293   </div>\r
294 </body>\r
295 </html>\r