e097390ee4f09d3093d53ac5bd2514409fe76927
[jalview.git] / help / html / misc / aminoAcids.html
1 <html>
2 <!--
3  * Jalview - A Sequence Alignment Editor and Viewer (Version 2.5)
4  * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
5  * 
6  * This file is part of Jalview.
7  * 
8  * Jalview is free software: you can redistribute it and/or
9  * modify it under the terms of the GNU General Public License 
10  * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
11  * 
12  * Jalview is distributed in the hope that it will be useful, but 
13  * WITHOUT ANY WARRANTY; without even the implied warranty 
14  * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
15  * PURPOSE.  See the GNU General Public License for more details.
16  * 
17  * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
18 -->
19 </style>
20 </head>
21
22 <body>
23
24
25 <div align="center">
26   <table width="450" BORDER ="1" cellpadding="3" BGCOLOR="#FFFFFF">
27     <tr> 
28       <td width="15">A</td>
29       <td width="25">Ala</td>
30       <td width="90">Alanine</td>
31       <td width="80">aliphatic<br>
32         hydrophobic<br>
33         neutral </td>
34       <td width="43" valign="middle">GCT<br>
35         GCC<br>
36         GCA<br>
37         GCG</td>
38       <td width="125"><img src="ala.jpg" width="94" height="81"></td>
39     </tr>
40     <tr> 
41       <td>B</td>
42       <td>&nbsp;</td>
43       <td>either aspartic acid or asparagine</td>
44       <td>&nbsp;</td>
45       <td>&nbsp;</td>
46       <td>&nbsp;</td>
47     </tr>
48     <tr> 
49       <td>C</td>
50       <td>Cys</td>
51       <td>Cysteine</td>
52       <td>polar<br>
53         hydrophobic<br>
54         neutral </td>
55       <td>TGT<br>
56         TGC</td>
57       <td><img src="cys.jpg" width="82" height="95"></td>
58     </tr>
59     <tr> 
60       <td>D</td>
61       <td>Asp</td>
62       <td>Aspartic Acid</td>
63       <td>polar<br>
64         hydrophilic<br>
65         charged (-) </td>
66       <td>GAT<br>
67         GAC</td>
68       <td><img src="aspartate.jpg" width="95" height="103"></td>
69     </tr>
70     <tr> 
71       <td>E</td>
72       <td>Glu</td>
73       <td>Glutamic Acid</td>
74       <td>polar<br>
75         hydrophilic<br>
76         charged (-) </td>
77       <td>GAA<br>
78         GAG</td>
79       <td><img src="glutamate.jpg" width="93" height="128"></td>
80     </tr>
81     <tr> 
82       <td>F</td>
83       <td>Phe</td>
84       <td>Phenylalanine</td>
85       <td>aromatic<br>
86         hydrophobic<br>
87         neutral</td>
88       <td>TTT<br>
89         TTC</td>
90       <td><img src="phe.jpg" width="87" height="134"></td>
91     </tr>
92     <tr> 
93       <td>G</td>
94       <td>Gly</td>
95       <td>Glycine</td>
96       <td>&nbsp;</td>
97       <td>GGT<br>
98         GGC<br>
99         GGA<br>
100         GGG</td>
101       <td><img src="gly.jpg" width="97" height="79"></td>
102     </tr>
103     <tr> 
104       <td>H</td>
105       <td>His</td>
106       <td>Histidine</td>
107       <td>aromatic<br>
108         polar<br>
109         hydrophilic<br>
110         charged (+) </td>
111       <td>CAT<br>
112         CAC</td>
113       <td><img src="his.jpg" width="97" height="142"></td>
114     </tr>
115     <tr> 
116       <td>I</td>
117       <td>Ile</td>
118       <td>Isoleucine</td>
119       <td>aliphatic<br>
120         hydrophobic<br>
121         neutral </td>
122       <td>ATT<br>
123         ATC<br>
124         ATA</td>
125       <td><img src="iso.jpg" width="101" height="125"></td>
126     </tr>
127     <tr> 
128       <td>K</td>
129       <td>Lys</td>
130       <td>Lysine</td>
131       <td>&nbsp;</td>
132       <td>AAA<br>
133         AAG</td>
134       <td><img src="lys.jpg" width="79" height="167"></td>
135     </tr>
136     <tr> 
137       <td>L</td>
138       <td>Leu</td>
139       <td>Leucine</td>
140       <td>aliphatic<br>
141         hydrophobic<br>
142         neutral </td>
143       <td>TTG<br>
144         TTA<br>
145         CTT<br>
146         CTC<br>
147         CTA<br>
148         CTG</td>
149       <td><img src="leu.jpg" width="97" height="120"></td>
150     </tr>
151     <tr> 
152       <td>M</td>
153       <td>Met</td>
154       <td>Methionine</td>
155       <td>hydrophobic<br>
156         neutral </td>
157       <td>ATG</td>
158       <td><img src="met.jpg" width="86" height="151"></td>
159     </tr>
160     <tr> 
161       <td>N</td>
162       <td>Asn</td>
163       <td>Asparagine</td>
164       <td>polar<br>
165         hydrophilic<br>
166         neutral </td>
167       <td>AAT<br>
168         AAC</td>
169       <td><img src="asparagine.jpg" width="84" height="116"></td>
170     </tr>
171     <tr> 
172       <td>P</td>
173       <td>Pro</td>
174       <td>Proline</td>
175       <td>hydrophobic<br>
176         neutral</td>
177       <td>CCT<br>
178         CCC<br>
179         CCA<br>
180         CCG</td>
181       <td><img src="pro.jpg" width="101" height="90"></td>
182     </tr>
183     <tr> 
184       <td>Q</td>
185       <td>Gln</td>
186       <td>Glutamine</td>
187       <td>polar<br>
188         hydrophilic<br>
189         neutral</td>
190       <td>CAA<br>
191         CAG</td>
192       <td><img src="glutamine.jpg" width="81" height="137"></td>
193     </tr>
194     <tr> 
195       <td>R</td>
196       <td>Arg</td>
197       <td>Arginine</td>
198       <td>polar<br>
199         hydrophilic<br>
200         charged (+) </td>
201       <td>CGT<br>
202         CGC<br>
203         CGA<br>
204         CGG<br>
205         AGA<br>
206         AGG</td>
207       <td><img src="arg.jpg" width="95" height="187"></td>
208     </tr>
209     <tr> 
210       <td>S</td>
211       <td>Ser</td>
212       <td>Serine</td>
213       <td>polar<br>
214         hydrophilic<br>
215         neutral </td>
216       <td>TCT<br>
217         TCC<br>
218         TCA<br>
219         TCG<br>
220         AGT<br>
221         AGC</td>
222       <td><img src="ser.jpg" width="96" height="74"></td>
223     </tr>
224     <tr> 
225       <td>T</td>
226       <td>Thr</td>
227       <td>Threonine</td>
228       <td>polar<br>
229         hydrophilic<br>
230         neutral </td>
231       <td>ACT<br>
232         ACC<br>
233         ACA<br>
234         ACG</td>
235       <td><img src="thr.jpg" width="94" height="96"></td>
236     </tr>
237     <tr> 
238       <td>V</td>
239       <td>Val</td>
240       <td>Valine</td>
241       <td>aliphatic<br>
242         hydrophobic<br>
243         neutral </td>
244       <td>GTT<br>
245         GTC<br>
246         GTA<br>
247         GTG</td>
248       <td><img src="val.jpg" width="99" height="98"></td>
249     </tr>
250     <tr> 
251       <td>W</td>
252       <td>Trp</td>
253       <td>Tryptophan</td>
254       <td>aromatic<br>
255         hydrophobic<br>
256         neutral</td>
257       <td>TGG</td>
258       <td><img src="tryp.jpg" width="106" height="173"></td>
259     </tr>
260     <tr> 
261       <td>X</td>
262       <td>&nbsp;</td>
263       <td>UNKNOWN</td>
264       <td>&nbsp;</td>
265       <td>&nbsp;</td>
266       <td>&nbsp;</td>
267     </tr>
268     <tr> 
269       <td>Y</td>
270       <td>Tyr</td>
271       <td>Tyrosine</td>
272       <td>aromatic<br>
273         polar<br>
274         hydrophobic </td>
275       <td>TAT<br>
276         TAC</td>
277       <td><img src="tyr.jpg" width="85" height="152"></td>
278     </tr>
279     <tr> 
280       <td>Z</td>
281       <td>&nbsp;</td>
282       <td>either glutamic acid or glutamine</td>
283       <td>&nbsp;</td>
284       <td>&nbsp;</td>
285       <td>&nbsp;</td>
286     </tr>
287     <tr> 
288       <td>&nbsp;</td>
289       <td>End</td>
290       <td>Terminator</td>
291       <td>&nbsp;</td>
292       <td>TAA<br>
293         TAG<br>
294         TGA</td>
295       <td>&nbsp;</td>
296     </tr>
297   </table>
298   </div>
299 </body>
300 </html>