3 * Jalview - A Sequence Alignment Editor and Viewer (Version 2.5)
4 * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
6 * This file is part of Jalview.
8 * Jalview is free software: you can redistribute it and/or
9 * modify it under the terms of the GNU General Public License
10 * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
12 * Jalview is distributed in the hope that it will be useful, but
13 * WITHOUT ANY WARRANTY; without even the implied warranty
14 * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15 * PURPOSE. See the GNU General Public License for more details.
17 * You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19 <head><title>Muscle Alignment</title></head>
21 <p><strong>Muscle Alignments</strong></p>
22 <p>Muscle is a program for the alignment of many protein sequences.</p>
24 Edgar, Robert C. (2004), MUSCLE: multiple sequence alignment with high
25 accuracy and high throughput<br>
26 <em>Nucleic Acids Research</em> <strong>32</strong>(5), 1792-97.</p>
27 <p> This alignment method is applied to the selected region, if any, or the whole
28 sequence set when the <strong>Web Service→Alignment→Muscle
29 Protein Sequence Alignment</strong> menu item is selected. </p>