3 * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
4 * Copyright (C) $$Year-Rel$$ The Jalview Authors
6 * This file is part of Jalview.
8 * Jalview is free software: you can redistribute it and/or
9 * modify it under the terms of the GNU General Public License
10 * as published by the Free Software Foundation, either version 3
11 * of the License, or (at your option) any later version.
13 * Jalview is distributed in the hope that it will be useful, but
14 * WITHOUT ANY WARRANTY; without even the implied warranty
15 * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
16 * PURPOSE. See the GNU General Public License for more details.
18 * You should have received a copy of the GNU General Public License
19 * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
20 * The Jalview Authors are detailed in the 'AUTHORS' file.
23 <title>What's new ?</title>
27 <strong>What's new in Jalview 2.10.5 ?</strong>
29 <p>Jalview 2.10.5 is a minor release that includes critical
30 patches for users working with Ensembl, RNA secondary structure
31 annotation, and those running Jalview on OSX with Java 10.</p>
33 <li>Jalview's default memory limit increased to 1G. <br/>If you have
34 problems starting Jalview 2.10.5 and you have 1G or less
35 physical memory on your machine, you will need to <a
36 href="memory.html#memsetting">reduce the memory</a> allocated to
39 <li>EPS, PNG and SVG export now includes hidden sequence
40 markers, and representative sequences are marked in bold.</li>
41 <li>Ensembl Client updated for Ensembl Rest API v7.<br />The
42 latest Ensembl API is not backwards compatible with earlier
43 versions of Jalview, so if you require Ensembl functionality you
44 will need to install this release.
46 <li>Improved support for VIENNA extended dot-bracket notation
47 for RNA secondary structure.</li>
48 <li>Positional and selected region highlighting in VARNA
49 'trimmed sequence' view made more reliable.</li>
52 The full list of bugs fixed in this release can be found in the <a
53 href="releases.html#Jalview.2.10.5">2.10.5 Release Notes</a>. The
54 majority of bug fixes and improvements in 2.10.5 are due to Jalview users
55 contacting us via the jalview-discuss email list. Thanks to everyone
56 who took the time to help make Jalview better !
59 <strong>Jalview and Java 10</strong>
61 <p>This release addresses a critical bug for OSX users who are
62 running Jalview with Java 10 which can prevent files being saved
63 correctly through the 'Save As' dialog box.</p>
66 <li>OSX: The 'Open File' dialog for Jalview's Groovy Console
67 appears with the title 'Save As', and attempting to select a file to load yields a FileNotFound exception.</br>The workaround is to first clear the 'Untitled' filename before selecting the file you wish to load.
69 <li>OSX: Links don't open when clicked on or via the Sequence or Alignment window popup menu.</li>
70 <li>OSX (Webstart): Jalview only displays old news feed items</li>