3 import org.apache.axis.client.*;
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7 import javax.activation.DataHandler;
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8 import org.apache.axis.AxisFault;
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9 import org.apache.axis.encoding.XMLType;
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10 import javax.xml.rpc.ParameterMode;
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11 import javax.xml.namespace.QName;
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12 import org.apache.axis.encoding.ser.JAFDataHandlerSerializerFactory;
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13 import org.apache.axis.encoding.ser.JAFDataHandlerDeserializerFactory;
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16 public class EBIFetchClient
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19 String format = "default";
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20 String style = "raw";
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22 public EBIFetchClient()
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25 call = (Call)new Service().createCall();
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26 call.setTargetEndpointAddress(new java.net.URL(
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27 "http://www.ebi.ac.uk/ws/services/Dbfetch"));
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28 }catch(Exception ex){}
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32 public String [] getSupportedDBs()
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36 call.setOperationName(new QName("urn:Dbfetch", "getSupportedDBs"));
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37 call.setReturnType(XMLType.SOAP_ARRAY);
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38 return (String[]) call.invoke(new Object[]{});
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40 }catch(Exception ex){return null;}
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43 public String [] getSupportedFormats()
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46 call.setOperationName(new QName("urn:Dbfetch", "getSupportedFormats"));
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47 call.setReturnType(XMLType.SOAP_ARRAY);
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48 return (String[]) call.invoke(new Object[] {});
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50 }catch(Exception ex){ return null; }
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53 public String [] getSupportedStyles()
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56 call.setOperationName(new QName("urn:Dbfetch", "getSupportedStyles"));
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57 call.setReturnType(XMLType.SOAP_ARRAY);
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58 return (String[]) call.invoke(new Object[] {});
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60 }catch(Exception ex){return null;}
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63 public String [] fetchData(String ids, String f, String s)
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65 // ids should be of the form uniprot:25KD_SARPE;ADHR_DROPS;
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66 // max 50 ids can be added at one time
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68 call.setOperationName(new QName("urn:Dbfetch", "fetchData"));
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69 call.addParameter("query", XMLType.XSD_STRING, ParameterMode.IN);
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70 call.addParameter("format", XMLType.XSD_STRING, ParameterMode.IN);
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71 call.addParameter("style", XMLType.XSD_STRING, ParameterMode.IN);
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72 call.setReturnType(XMLType.SOAP_ARRAY);
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80 return (String[]) call.invoke(new Object[] {ids, format, style});
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82 }catch(Exception ex){return null;}
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86 public String fetchDataFile(String arg, String f, String s)
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96 call.setOperationName(new QName("urn:Dbfetch", "fetchDataFile"));
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97 call.addParameter("query", XMLType.XSD_STRING, ParameterMode.IN);
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98 call.addParameter("format", XMLType.XSD_STRING, ParameterMode.IN);
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99 call.addParameter("style", XMLType.XSD_STRING, ParameterMode.IN);
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101 QName qnameAttachment = new QName("urn:Dbfetch", "DataHandler");
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102 call.registerTypeMapping(javax.activation.DataSource.class,
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104 JAFDataHandlerSerializerFactory.class,
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105 JAFDataHandlerDeserializerFactory.class);
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107 call.setReturnType(qnameAttachment);
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110 Object ret = call.invoke(new Object[]
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111 {arg, format, style});
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115 System.err.println("Received null ");
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116 throw new AxisFault("", "Received null", null, null);
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118 if (ret instanceof String)
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120 System.err.println("Received problem response from server: " + ret);
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121 throw new AxisFault("", (String) ret, null, null);
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123 if (! (ret instanceof DataHandler))
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125 //The wrong type of object that what was expected.
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126 System.err.println("Received problem response from server:" +
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127 ret.getClass().getName());
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128 throw new AxisFault("", "Received problem response from server:" +
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129 ret.getClass().getName(), null, null);
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132 //Still here, so far so good.
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133 DataHandler rdh = (DataHandler) ret;
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135 //From here we'll just treat the data resource as file.
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136 String receivedfileName = rdh.getName(); //Get the filename.
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138 if (receivedfileName == null)
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140 System.err.println("Could not get the file name.");
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141 throw new AxisFault("", "Could not get the file name.", null, null);
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143 if (arg.equalsIgnoreCase("medline"))
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145 return receivedfileName;
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147 else if (arg.equalsIgnoreCase("interpro"))
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149 return receivedfileName;
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152 System.err.println(receivedfileName);
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153 }catch(Exception ex)
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155 ex.printStackTrace();
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