1 package jalview.analysis;
3 import static org.testng.AssertJUnit.assertEquals;
4 import static org.testng.AssertJUnit.assertSame;
6 import jalview.datamodel.DBRefEntry;
8 import org.testng.annotations.Test;
10 public class CrossRefTest
13 public void testFindXDbRefs()
15 DBRefEntry ref1 = new DBRefEntry("UNIPROT", "1", "A123");
16 DBRefEntry ref2 = new DBRefEntry("UNIPROTKB/TREMBL", "1", "A123");
17 DBRefEntry ref3 = new DBRefEntry("pdb", "1", "A123");
18 DBRefEntry ref4 = new DBRefEntry("EMBLCDSPROTEIN", "1", "A123");
19 DBRefEntry ref5 = new DBRefEntry("embl", "1", "A123");
20 DBRefEntry ref6 = new DBRefEntry("emblCDS", "1", "A123");
21 DBRefEntry ref7 = new DBRefEntry("GeneDB", "1", "A123");
22 DBRefEntry ref8 = new DBRefEntry("PFAM", "1", "A123");
23 DBRefEntry[] refs = new DBRefEntry[]
24 { ref1, ref2, ref3, ref4, ref5, ref6, ref7, ref8 };
29 DBRefEntry[] found = CrossRef.findXDbRefs(false, refs);
30 assertEquals(3, found.length);
31 assertSame(ref5, found[0]);
32 assertSame(ref6, found[1]);
33 assertSame(ref7, found[2]);
36 * Just the protein refs:
38 found = CrossRef.findXDbRefs(true, refs);
39 assertEquals(4, found.length);
40 assertSame(ref1, found[0]);
41 assertSame(ref2, found[1]);
42 assertSame(ref3, found[2]);
43 assertSame(ref4, found[3]);