2 * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
3 * Copyright (C) 2014 The Jalview Authors
5 * This file is part of Jalview.
7 * Jalview is free software: you can redistribute it and/or
8 * modify it under the terms of the GNU General Public License
9 * as published by the Free Software Foundation, either version 3
10 * of the License, or (at your option) any later version.
12 * Jalview is distributed in the hope that it will be useful, but
13 * WITHOUT ANY WARRANTY; without even the implied warranty
14 * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15 * PURPOSE. See the GNU General Public License for more details.
17 * You should have received a copy of the GNU General Public License
18 * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19 * The Jalview Authors are detailed in the 'AUTHORS' file.
21 package jalview.api.structures;
23 import jalview.api.FeatureRenderer;
24 import jalview.api.SequenceRenderer;
25 import jalview.api.SequenceStructureBinding;
26 import jalview.datamodel.AlignmentI;
27 import jalview.datamodel.SequenceI;
28 import jalview.ext.jmol.JalviewJmolBinding;
29 import jalview.schemes.ColourSchemeI;
30 import jalview.schemes.UserColourScheme;
31 import jalview.structure.StructureMappingcommandSet;
32 import jalview.structure.StructureSelectionManager;
34 public interface JalviewStructureDisplayI
37 SequenceStructureBinding getBinding();
40 * @return true if there is an active GUI handling a structure display
45 * enable or disable the structure display - note this might just hide or show
46 * a GUI element, but not actually reset the display
50 void setVisible(boolean b);
53 * free up any external resources that were used by this display and collect
59 * shutdown any structure viewing processes started by this display
63 * apply a colourscheme to the structures in the viewer
66 void setJalviewColourScheme(ColourSchemeI colourScheme);