2 * Jalview - A Sequence Alignment Editor and Viewer
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3 * Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
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5 * This program is free software; you can redistribute it and/or
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6 * modify it under the terms of the GNU General Public License
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7 * as published by the Free Software Foundation; either version 2
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8 * of the License, or (at your option) any later version.
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10 * This program is distributed in the hope that it will be useful,
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11 * but WITHOUT ANY WARRANTY; without even the implied warranty of
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12 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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13 * GNU General Public License for more details.
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15 * You should have received a copy of the GNU General Public License
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16 * along with this program; if not, write to the Free Software
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17 * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
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26 public class FileParse {
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28 public int fileSize;
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30 protected String type;
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31 protected BufferedReader dataIn;
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33 public FileParse() {
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36 public FileParse(String fileStr, String type)
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37 throws MalformedURLException, IOException {
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40 if (type.equals("File")) {
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41 this.inFile = new File(fileStr);
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42 this.fileSize = (int) inFile.length();
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44 dataIn = new BufferedReader(new FileReader(fileStr));
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45 } else if (type.equals("URL")) {
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46 URL url = new URL(fileStr);
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48 dataIn = new BufferedReader(new InputStreamReader(url.openStream()));
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49 } else if (type.equals("Paste")) {
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50 dataIn = new BufferedReader(new StringReader(fileStr));
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54 public String nextLine() throws IOException {
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55 String next = dataIn.readLine();
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