2 * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3 * Copyright (C) $$Year-Rel$$ The Jalview Authors
5 * This file is part of Jalview.
7 * Jalview is free software: you can redistribute it and/or
8 * modify it under the terms of the GNU General Public License
9 * as published by the Free Software Foundation, either version 3
10 * of the License, or (at your option) any later version.
12 * Jalview is distributed in the hope that it will be useful, but
13 * WITHOUT ANY WARRANTY; without even the implied warranty
14 * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15 * PURPOSE. See the GNU General Public License for more details.
17 * You should have received a copy of the GNU General Public License
18 * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19 * The Jalview Authors are detailed in the 'AUTHORS' file.
21 package jalview.jbgui;
23 import jalview.api.AlignmentViewPanel;
24 import jalview.io.FileFormatException;
25 import jalview.util.MessageManager;
26 import jalview.util.Platform;
28 import java.awt.FlowLayout;
29 import java.awt.Toolkit;
30 import java.awt.event.ActionEvent;
31 import java.awt.event.ActionListener;
33 import javax.swing.JCheckBoxMenuItem;
34 import javax.swing.JFrame;
35 import javax.swing.JMenu;
36 import javax.swing.JMenuBar;
37 import javax.swing.JMenuItem;
45 public class GDesktop extends JFrame
47 protected static JMenu windowMenu = new JMenu();
49 JMenuBar desktopMenubar = new JMenuBar();
51 JMenu FileMenu = new JMenu();
53 JMenu HelpMenu = new JMenu();
55 protected JMenu VamsasMenu = new JMenu();
57 protected JMenu VamsasStMenu = new JMenu();
59 JMenuItem inputLocalFileMenuItem = new JMenuItem();
61 JMenuItem inputURLMenuItem = new JMenuItem();
63 JMenuItem inputTextboxMenuItem = new JMenuItem();
65 JMenuItem quit = new JMenuItem();
67 JMenuItem aboutMenuItem = new JMenuItem();
69 JMenuItem documentationMenuItem = new JMenuItem();
71 FlowLayout flowLayout1 = new FlowLayout();
73 protected JMenu toolsMenu = new JMenu();
75 JMenuItem preferences = new JMenuItem();
77 JMenuItem saveState = new JMenuItem();
79 JMenuItem loadState = new JMenuItem();
81 JMenu inputMenu = new JMenu();
83 protected JMenuItem vamsasStart = new JMenuItem();
85 protected JMenuItem vamsasImport = new JMenuItem();
87 protected JMenuItem vamsasSave = new JMenuItem();
89 JMenuItem inputSequence = new JMenuItem();
91 protected JMenuItem vamsasStop = new JMenuItem();
93 JMenuItem closeAll = new JMenuItem();
95 JMenuItem raiseRelated = new JMenuItem();
97 JMenuItem minimizeAssociated = new JMenuItem();
99 protected JCheckBoxMenuItem showMemusage = new JCheckBoxMenuItem();
101 JMenuItem garbageCollect = new JMenuItem();
103 protected JMenuItem groovyShell;
105 protected JCheckBoxMenuItem experimentalFeatures;
107 protected JCheckBoxMenuItem showConsole = new JCheckBoxMenuItem();
109 protected JCheckBoxMenuItem showNews = new JCheckBoxMenuItem();
111 protected JMenuItem snapShotWindow = new JMenuItem();
114 * Creates a new GDesktop object.
121 this.setJMenuBar(desktopMenubar);
122 } catch (Exception e)
127 if (!Platform.isAMac())
129 FileMenu.setMnemonic('F');
130 inputLocalFileMenuItem.setMnemonic('L');
131 VamsasMenu.setMnemonic('V');
132 inputURLMenuItem.setMnemonic('U');
133 inputTextboxMenuItem.setMnemonic('C');
134 quit.setMnemonic('Q');
135 saveState.setMnemonic('S');
136 loadState.setMnemonic('L');
137 inputMenu.setMnemonic('I');
147 private void jbInit() throws Exception
150 FileMenu.setText(MessageManager.getString("action.file"));
151 HelpMenu.setText(MessageManager.getString("action.help"));
152 VamsasMenu.setText("Vamsas");
153 VamsasMenu.setToolTipText(MessageManager
154 .getString("label.share_data_vamsas_applications"));
155 VamsasStMenu.setText(MessageManager.getString("label.connect_to"));
156 VamsasStMenu.setToolTipText(
157 MessageManager.getString("label.join_existing_vamsas_session"));
158 inputLocalFileMenuItem
159 .setText(MessageManager.getString("label.load_tree_from_file"));
160 inputLocalFileMenuItem.setAccelerator(
161 javax.swing.KeyStroke.getKeyStroke(java.awt.event.KeyEvent.VK_O,
162 Toolkit.getDefaultToolkit().getMenuShortcutKeyMask(),
164 inputLocalFileMenuItem
165 .addActionListener(new java.awt.event.ActionListener()
168 public void actionPerformed(ActionEvent e)
170 inputLocalFileMenuItem_actionPerformed(null);
173 inputURLMenuItem.setText(MessageManager.getString("label.from_url"));
174 inputURLMenuItem.addActionListener(new java.awt.event.ActionListener()
177 public void actionPerformed(ActionEvent e)
181 inputURLMenuItem_actionPerformed(null);
182 } catch (FileFormatException e1)
184 System.err.println("Error loading from URL: " + e1.getMessage());
189 .setText(MessageManager.getString("label.from_textbox"));
191 .addActionListener(new java.awt.event.ActionListener()
194 public void actionPerformed(ActionEvent e)
196 inputTextboxMenuItem_actionPerformed(null);
199 quit.setText(MessageManager.getString("action.quit"));
200 quit.addActionListener(new java.awt.event.ActionListener()
203 public void actionPerformed(ActionEvent e)
208 aboutMenuItem.setText(MessageManager.getString("label.about"));
209 aboutMenuItem.addActionListener(new java.awt.event.ActionListener()
212 public void actionPerformed(ActionEvent e)
214 aboutMenuItem_actionPerformed(e);
217 documentationMenuItem
218 .setText(MessageManager.getString("label.documentation"));
219 documentationMenuItem.setAccelerator(javax.swing.KeyStroke
220 .getKeyStroke(java.awt.event.KeyEvent.VK_F1, 0, false));
221 documentationMenuItem
222 .addActionListener(new java.awt.event.ActionListener()
225 public void actionPerformed(ActionEvent e)
227 documentationMenuItem_actionPerformed(e);
230 this.getContentPane().setLayout(flowLayout1);
231 windowMenu.setText(MessageManager.getString("label.window"));
232 preferences.setText(MessageManager.getString("label.preferences"));
233 preferences.addActionListener(new ActionListener()
236 public void actionPerformed(ActionEvent e)
238 preferences_actionPerformed(e);
241 toolsMenu.setText(MessageManager.getString("label.tools"));
242 saveState.setText(MessageManager.getString("action.save_project"));
243 saveState.addActionListener(new ActionListener()
246 public void actionPerformed(ActionEvent e)
248 saveState_actionPerformed(true);
251 JMenuItem saveAsJaxb = new JMenuItem("Save Project as JAXB");
252 saveAsJaxb.addActionListener(new ActionListener()
255 public void actionPerformed(ActionEvent e)
257 saveState_actionPerformed(false);
260 loadState.setText(MessageManager.getString("action.load_project"));
261 loadState.addActionListener(new ActionListener()
264 public void actionPerformed(ActionEvent e)
266 loadState_actionPerformed(true);
269 JMenuItem loadAsJaxb = new JMenuItem("Load Project as JAXB");
270 loadAsJaxb.addActionListener(new ActionListener()
273 public void actionPerformed(ActionEvent e)
275 loadState_actionPerformed(false);
278 inputMenu.setText(MessageManager.getString("label.input_alignment"));
280 .setText(MessageManager.getString("label.new_vamsas_session"));
281 vamsasStart.setVisible(false);
282 vamsasStart.addActionListener(new ActionListener()
285 public void actionPerformed(ActionEvent e)
287 vamsasStart_actionPerformed(e);
290 vamsasImport.setText(
291 MessageManager.getString("action.load_vamsas_session"));
292 vamsasImport.setVisible(false);
293 vamsasImport.addActionListener(new ActionListener()
296 public void actionPerformed(ActionEvent e)
298 vamsasImport_actionPerformed(e);
302 MessageManager.getString("action.save_vamsas_session"));
303 vamsasSave.setVisible(false);
304 vamsasSave.addActionListener(new ActionListener()
307 public void actionPerformed(ActionEvent e)
309 vamsasSave_actionPerformed(e);
313 .setText(MessageManager.getString("action.fetch_sequences"));
314 inputSequence.addActionListener(new ActionListener()
317 public void actionPerformed(ActionEvent e)
319 inputSequence_actionPerformed(e);
323 .setText(MessageManager.getString("label.stop_vamsas_session"));
324 vamsasStop.setVisible(false);
325 vamsasStop.addActionListener(new ActionListener()
328 public void actionPerformed(ActionEvent e)
330 vamsasStop_actionPerformed(e);
333 closeAll.setText(MessageManager.getString("action.close_all"));
334 closeAll.addActionListener(new ActionListener()
337 public void actionPerformed(ActionEvent e)
339 closeAll_actionPerformed(e);
342 raiseRelated.setText(
343 MessageManager.getString("action.raise_associated_windows"));
344 raiseRelated.addActionListener(new ActionListener()
347 public void actionPerformed(ActionEvent e)
349 raiseRelated_actionPerformed(e);
352 minimizeAssociated.setText(
353 MessageManager.getString("action.minimize_associated_windows"));
354 minimizeAssociated.addActionListener(new ActionListener()
357 public void actionPerformed(ActionEvent e)
359 minimizeAssociated_actionPerformed(e);
363 .setText(MessageManager.getString("label.collect_garbage"));
364 garbageCollect.addActionListener(new ActionListener()
367 public void actionPerformed(ActionEvent e)
369 garbageCollect_actionPerformed(e);
373 .setText(MessageManager.getString("label.show_memory_usage"));
374 showMemusage.addActionListener(new ActionListener()
377 public void actionPerformed(ActionEvent e)
379 showMemusage_actionPerformed(e);
383 .setText(MessageManager.getString("label.show_java_console"));
384 showConsole.addActionListener(new ActionListener()
387 public void actionPerformed(ActionEvent e)
389 showConsole_actionPerformed(e);
392 showNews.setText(MessageManager.getString("label.show_jalview_news"));
393 showNews.addActionListener(new ActionListener()
396 public void actionPerformed(ActionEvent e)
398 showNews_actionPerformed(e);
401 groovyShell = new JMenuItem();
402 groovyShell.setText(MessageManager.getString("label.groovy_console"));
403 groovyShell.addActionListener(new ActionListener()
406 public void actionPerformed(ActionEvent e)
408 groovyShell_actionPerformed();
411 experimentalFeatures = new JCheckBoxMenuItem();
413 .setText(MessageManager.getString("label.show_experimental"));
414 experimentalFeatures.setToolTipText(
415 MessageManager.getString("label.show_experimental_tip"));
416 experimentalFeatures.addActionListener(new ActionListener()
419 public void actionPerformed(ActionEvent e)
421 showExperimental_actionPerformed(experimentalFeatures.isSelected());
425 snapShotWindow.setText(MessageManager.getString("label.take_snapshot"));
426 snapShotWindow.addActionListener(new ActionListener()
429 public void actionPerformed(ActionEvent e)
431 snapShotWindow_actionPerformed(e);
435 desktopMenubar.add(FileMenu);
436 desktopMenubar.add(toolsMenu);
437 VamsasMenu.setVisible(false);
438 desktopMenubar.add(VamsasMenu);
439 desktopMenubar.add(HelpMenu);
440 desktopMenubar.add(windowMenu);
441 FileMenu.add(inputMenu);
442 FileMenu.add(inputSequence);
443 FileMenu.addSeparator();
444 FileMenu.add(saveState);
445 FileMenu.add(saveAsJaxb);
446 FileMenu.add(loadState);
447 FileMenu.add(loadAsJaxb);
448 FileMenu.addSeparator();
450 HelpMenu.add(aboutMenuItem);
451 HelpMenu.add(documentationMenuItem);
452 VamsasMenu.add(VamsasStMenu);
453 VamsasStMenu.setVisible(false);
454 VamsasMenu.add(vamsasStart);
455 VamsasMenu.add(vamsasImport);
456 VamsasMenu.add(vamsasSave);
457 VamsasMenu.add(vamsasStop);
458 toolsMenu.add(preferences);
459 toolsMenu.add(showMemusage);
460 toolsMenu.add(showConsole);
461 toolsMenu.add(showNews);
462 toolsMenu.add(garbageCollect);
463 toolsMenu.add(groovyShell);
464 toolsMenu.add(experimentalFeatures);
465 // toolsMenu.add(snapShotWindow);
466 inputMenu.add(inputLocalFileMenuItem);
467 inputMenu.add(inputURLMenuItem);
468 inputMenu.add(inputTextboxMenuItem);
469 windowMenu.add(closeAll);
470 windowMenu.add(raiseRelated);
471 windowMenu.add(minimizeAssociated);
472 windowMenu.addSeparator();
473 // inputMenu.add(vamsasLoad);
476 protected void showExperimental_actionPerformed(boolean selected)
480 protected void groovyShell_actionPerformed()
484 protected void snapShotWindow_actionPerformed(ActionEvent e)
486 // TODO Auto-generated method stub
490 protected void showConsole_actionPerformed(ActionEvent e)
492 // TODO Auto-generated method stub
496 protected void showNews_actionPerformed(ActionEvent e)
498 // TODO Auto-generated method stub
502 protected void showMemusage_actionPerformed(ActionEvent e)
504 // TODO Auto-generated method stub
508 protected void garbageCollect_actionPerformed(ActionEvent e)
510 // TODO Auto-generated method stub
514 protected void vamsasStMenu_actionPerformed()
518 public void vamsasSave_actionPerformed(ActionEvent e)
528 protected void inputLocalFileMenuItem_actionPerformed(
529 jalview.gui.AlignViewport av)
538 * @throws FileFormatException
540 protected void inputURLMenuItem_actionPerformed(
541 jalview.gui.AlignViewport av) throws FileFormatException
551 protected void inputTextboxMenuItem_actionPerformed(
552 AlignmentViewPanel avp)
559 protected void quit()
569 protected void aboutMenuItem_actionPerformed(ActionEvent e)
579 protected void documentationMenuItem_actionPerformed(ActionEvent e)
589 public void SaveState_actionPerformed(ActionEvent e)
599 protected void preferences_actionPerformed(ActionEvent e)
609 public void saveState_actionPerformed(boolean asCastor)
619 public void loadState_actionPerformed(boolean asCastor)
629 public void loadJalviewAlign_actionPerformed(ActionEvent e)
633 public void vamsasStart_actionPerformed(ActionEvent e)
638 public void inputSequence_actionPerformed(ActionEvent e)
643 public void vamsasStop_actionPerformed(ActionEvent e)
648 public void closeAll_actionPerformed(ActionEvent e)
653 public void raiseRelated_actionPerformed(ActionEvent e)
658 public void minimizeAssociated_actionPerformed(ActionEvent e)
663 public void vamsasImport_actionPerformed(ActionEvent e)