2 * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
3 * Copyright (C) 2014 The Jalview Authors
5 * This file is part of Jalview.
7 * Jalview is free software: you can redistribute it and/or
8 * modify it under the terms of the GNU General Public License
9 * as published by the Free Software Foundation, either version 3
10 * of the License, or (at your option) any later version.
12 * Jalview is distributed in the hope that it will be useful, but
13 * WITHOUT ANY WARRANTY; without even the implied warranty
14 * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15 * PURPOSE. See the GNU General Public License for more details.
17 * You should have received a copy of the GNU General Public License
18 * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19 * The Jalview Authors are detailed in the 'AUTHORS' file.
22 package jalview.jbgui;
24 import jalview.gui.Desktop;
25 import jalview.gui.JvSwingUtils;
26 import jalview.jbgui.PDBDocFieldPreferences.PreferenceSource;
27 import jalview.util.MessageManager;
28 import jalview.ws.dbsources.PDBRestClient.PDBDocField;
30 import java.awt.BorderLayout;
31 import java.awt.Dimension;
32 import java.awt.event.ActionEvent;
33 import java.awt.event.ActionListener;
34 import java.awt.event.KeyAdapter;
35 import java.awt.event.KeyEvent;
36 import java.awt.event.MouseAdapter;
37 import java.awt.event.MouseEvent;
38 import java.util.Arrays;
40 import javax.swing.ImageIcon;
41 import javax.swing.JButton;
42 import javax.swing.JComboBox;
43 import javax.swing.JFrame;
44 import javax.swing.JInternalFrame;
45 import javax.swing.JLabel;
46 import javax.swing.JPanel;
47 import javax.swing.JScrollPane;
48 import javax.swing.JTabbedPane;
49 import javax.swing.JTable;
50 import javax.swing.JTextField;
51 import javax.swing.event.ChangeEvent;
52 import javax.swing.event.ChangeListener;
53 import javax.swing.event.DocumentEvent;
54 import javax.swing.event.DocumentListener;
57 * GUI layout for PDB Fetch Panel
62 @SuppressWarnings("serial")
63 public abstract class GPDBSearchPanel extends JPanel
65 protected String frameTitle = MessageManager
66 .getString("label.pdb_sequence_getcher");
68 protected JInternalFrame mainFrame = new JInternalFrame(frameTitle);
70 protected JComboBox<PDBDocField> cmb_searchTarget = new JComboBox<PDBDocField>();
72 protected JButton btn_ok = new JButton();
74 protected JButton btn_back = new JButton();
76 protected JButton btn_cancel = new JButton();
78 protected JTextField txt_search = new JTextField(20);
80 protected JTable tbl_summary = new JTable()
82 public String getToolTipText(MouseEvent evt)
84 String toolTipText = null;
85 java.awt.Point pnt = evt.getPoint();
86 int rowIndex = rowAtPoint(pnt);
87 int colIndex = columnAtPoint(pnt);
91 toolTipText = getValueAt(rowIndex, colIndex).toString();
96 toolTipText = (toolTipText == null ? null
97 : (toolTipText.length() > 500 ? JvSwingUtils.wrapTooltip(
98 true, toolTipText.subSequence(0, 500) + "...")
99 : JvSwingUtils.wrapTooltip(true, toolTipText)));
105 protected StringBuilder errorWarning = new StringBuilder();
107 protected JScrollPane scrl_searchResult = new JScrollPane(tbl_summary);
109 protected ImageIcon warningImage = new ImageIcon(getClass().getResource(
110 "/images/warning.gif"));
112 protected ImageIcon loadingImage = new ImageIcon(getClass().getResource(
113 "/images/loading.gif"));
115 protected JLabel lbl_warning = new JLabel(warningImage);
117 protected JLabel lbl_loading = new JLabel(loadingImage);
119 private JTabbedPane tabbedPane = new JTabbedPane();
121 private PDBDocFieldPreferences pdbDocFieldPrefs = new PDBDocFieldPreferences(
122 PreferenceSource.SEARCH_SUMMARY);
124 private JPanel pnl_actions = new JPanel();
126 private JPanel pnl_results = new JPanel();
128 private JPanel pnl_inputs = new JPanel();
130 private BorderLayout mainLayout = new BorderLayout();
132 protected PDBDocField[] previousWantedFields;
134 public GPDBSearchPanel()
139 mainFrame.invalidate();
141 } catch (Exception e)
148 * Initializes the GUI default properties
152 private void jbInit() throws Exception
154 lbl_warning.setVisible(false);
155 lbl_warning.setFont(new java.awt.Font("Verdana", 0, 12));
156 lbl_loading.setVisible(false);
157 lbl_loading.setFont(new java.awt.Font("Verdana", 0, 12));
159 tbl_summary.setAutoCreateRowSorter(true);
160 tbl_summary.getTableHeader().setReorderingAllowed(false);
161 tbl_summary.addMouseListener(new MouseAdapter()
163 public void mouseClicked(MouseEvent e)
168 public void mouseReleased(MouseEvent e)
173 tbl_summary.addKeyListener(new KeyAdapter()
176 public void keyPressed(KeyEvent evt)
179 switch (evt.getKeyCode())
181 case KeyEvent.VK_ESCAPE: // escape key
182 btn_back_ActionPerformed();
184 case KeyEvent.VK_ENTER: // enter key
185 if (btn_ok.isEnabled())
187 btn_ok_ActionPerformed();
191 case KeyEvent.VK_TAB: // tab key
192 if (evt.isShiftDown())
194 tabbedPane.requestFocus();
198 btn_back.requestFocus();
208 btn_back.setFont(new java.awt.Font("Verdana", 0, 12));
209 btn_back.setText(MessageManager.getString("action.back"));
210 btn_back.addActionListener(new java.awt.event.ActionListener()
212 public void actionPerformed(ActionEvent e)
214 btn_back_ActionPerformed();
217 btn_back.addKeyListener(new KeyAdapter()
220 public void keyPressed(KeyEvent evt)
222 if (evt.getKeyCode() == KeyEvent.VK_ENTER)
224 btn_back_ActionPerformed();
229 btn_ok.setEnabled(false);
230 btn_ok.setFont(new java.awt.Font("Verdana", 0, 12));
231 btn_ok.setText(MessageManager.getString("action.ok"));
232 btn_ok.addActionListener(new java.awt.event.ActionListener()
234 public void actionPerformed(ActionEvent e)
236 btn_ok_ActionPerformed();
239 btn_ok.addKeyListener(new KeyAdapter()
242 public void keyPressed(KeyEvent evt)
244 if (evt.getKeyCode() == KeyEvent.VK_ENTER)
246 btn_ok_ActionPerformed();
251 btn_cancel.setFont(new java.awt.Font("Verdana", 0, 12));
252 btn_cancel.setText(MessageManager.getString("action.cancel"));
253 btn_cancel.addActionListener(new java.awt.event.ActionListener()
255 public void actionPerformed(ActionEvent e)
257 btn_cancel_ActionPerformed();
260 btn_cancel.addKeyListener(new KeyAdapter()
263 public void keyPressed(KeyEvent evt)
265 if (evt.getKeyCode() == KeyEvent.VK_ENTER)
267 btn_cancel_ActionPerformed();
272 scrl_searchResult.setPreferredSize(new Dimension(500, 300));
274 .setHorizontalScrollBarPolicy(JScrollPane.HORIZONTAL_SCROLLBAR_NEVER);
276 cmb_searchTarget.setFont(new java.awt.Font("Verdana", 0, 12));
277 cmb_searchTarget.addActionListener(new ActionListener()
280 public void actionPerformed(ActionEvent e)
283 if ("all".equalsIgnoreCase(getCmbSearchTarget().getSelectedItem()
286 tooltipText = MessageManager.getString("label.search_all");
288 else if ("pdb id".equalsIgnoreCase(getCmbSearchTarget()
289 .getSelectedItem().toString()))
291 tooltipText = MessageManager
292 .getString("label.separate_multiple_accession_ids");
296 tooltipText = MessageManager.formatMessage(
297 "label.separate_multiple_query_values",
298 new Object[] { getCmbSearchTarget().getSelectedItem()
301 txt_search.setToolTipText(JvSwingUtils.wrapTooltip(true,
303 txt_search_ActionPerformed();
307 populateCmbSearchTargetOptions();
309 txt_search.setFont(new java.awt.Font("Verdana", 0, 12));
311 txt_search.addKeyListener(new KeyAdapter()
314 public void keyPressed(KeyEvent e)
316 if (e.getKeyCode() == KeyEvent.VK_ENTER)
318 if (txt_search.getText() == null
319 || txt_search.getText().isEmpty())
323 if ("pdb id".equalsIgnoreCase(getCmbSearchTarget()
324 .getSelectedItem().toString()))
326 transferToSequenceFetcher(txt_search.getText());
332 txt_search.getDocument().addDocumentListener(new DocumentListener()
335 public void insertUpdate(DocumentEvent e)
337 txt_search_ActionPerformed();
341 public void removeUpdate(DocumentEvent e)
343 txt_search_ActionPerformed();
347 public void changedUpdate(DocumentEvent e)
349 txt_search_ActionPerformed();
353 final String searchTabTitle = MessageManager
354 .getString("label.search_result");
355 final String configureCols = MessageManager
356 .getString("label.configure_displayed_columns");
357 ChangeListener changeListener = new ChangeListener()
359 public void stateChanged(ChangeEvent changeEvent)
361 JTabbedPane sourceTabbedPane = (JTabbedPane) changeEvent
363 int index = sourceTabbedPane.getSelectedIndex();
364 if (sourceTabbedPane.getTitleAt(index).equals(configureCols))
366 btn_back.setEnabled(false);
367 btn_cancel.setEnabled(false);
368 btn_ok.setEnabled(false);
369 previousWantedFields = PDBDocFieldPreferences
370 .getSearchSummaryFields().toArray(new PDBDocField[0]);
372 if (sourceTabbedPane.getTitleAt(index).equals(searchTabTitle))
374 btn_back.setEnabled(true);
375 btn_cancel.setEnabled(true);
376 if (wantedFieldsUpdated())
378 txt_search_ActionPerformed();
387 tabbedPane.addChangeListener(changeListener);
388 tabbedPane.setPreferredSize(new Dimension(500, 300));
389 tabbedPane.add(searchTabTitle, scrl_searchResult);
390 tabbedPane.add(configureCols, pdbDocFieldPrefs);
392 pnl_actions.add(btn_back);
393 pnl_actions.add(btn_ok);
394 pnl_actions.add(btn_cancel);
396 pnl_results.add(tabbedPane);
397 pnl_inputs.add(cmb_searchTarget);
398 pnl_inputs.add(txt_search);
399 pnl_inputs.add(lbl_loading);
400 pnl_inputs.add(lbl_warning);
402 this.setLayout(mainLayout);
403 this.add(pnl_inputs, java.awt.BorderLayout.NORTH);
404 this.add(pnl_results, java.awt.BorderLayout.CENTER);
405 this.add(pnl_actions, java.awt.BorderLayout.SOUTH);
406 mainFrame.setVisible(true);
407 mainFrame.setContentPane(this);
408 mainFrame.setDefaultCloseOperation(JFrame.DISPOSE_ON_CLOSE);
409 Desktop.addInternalFrame(mainFrame, frameTitle, 800, 400);
412 public boolean wantedFieldsUpdated()
414 if (previousWantedFields == null)
419 return Arrays.equals(PDBDocFieldPreferences.getSearchSummaryFields()
420 .toArray(new PDBDocField[0]), previousWantedFields) ? false
425 public void validateSelection()
427 if (tbl_summary.getSelectedRows().length > 0)
429 btn_ok.setEnabled(true);
433 btn_ok.setEnabled(false);
437 public JComboBox<PDBDocField> getCmbSearchTarget()
439 return cmb_searchTarget;
442 public JTextField getTxtSearch()
447 public JInternalFrame getMainFrame()
452 public abstract void transferToSequenceFetcher(String ids);
454 public abstract void txt_search_ActionPerformed();
456 public abstract void btn_ok_ActionPerformed();
458 public abstract void btn_back_ActionPerformed();
460 public abstract void btn_cancel_ActionPerformed();
462 public abstract void populateCmbSearchTargetOptions();