2 * Jalview - A Sequence Alignment Editor and Viewer
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3 * Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
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5 * This program is free software; you can redistribute it and/or
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6 * modify it under the terms of the GNU General Public License
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7 * as published by the Free Software Foundation; either version 2
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8 * of the License, or (at your option) any later version.
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10 * This program is distributed in the hope that it will be useful,
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11 * but WITHOUT ANY WARRANTY; without even the implied warranty of
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12 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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13 * GNU General Public License for more details.
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15 * You should have received a copy of the GNU General Public License
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16 * along with this program; if not, write to the Free Software
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17 * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
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21 import java.util.Hashtable;
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25 * <p>Title: MsaWServices </p>
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27 * <p>Description: Registry of MsaWSI style services </p>
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29 * <p>Copyright: Copyright (c) 2004</p>
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31 * <p>Company: Dundee University</p>
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33 * @author not attributable
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37 * TODO: MsaWServices will be set from properties and be dynamically discovered.
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39 public class MsaWServices
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41 /** DOCUMENT ME!! */
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42 public static Hashtable info;
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46 info = new Hashtable();
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47 info.put("ClustalWS",
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50 "http://www.compbio.dundee.ac.uk/JalviewWS/services/ClustalWS",
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51 "ClustalW Alignment job",
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53 "\"Thompson, J.D., Higgins, D.G. and Gibson, T.J. (1994) CLUSTAL W: improving the sensitivity of progressive multiple" +
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54 " sequence alignment through sequence weighting, position specific gap penalties and weight matrix choice." +
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55 " Nucleic Acids Research, 22 4673-4680"
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57 info.put("MuscleWS",
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60 "http://www.compbio.dundee.ac.uk/JalviewWS/services/MuscleWS",
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61 "Muscle Alignment job",
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63 "Edgar, Robert C. (2004), MUSCLE: multiple sequence alignment " +
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64 "with high accuracy and high throughput, Nucleic Acids Research 32(5), 1792-97."
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