2 * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)
3 * Copyright (C) 2011 J Procter, AM Waterhouse, J Engelhardt, LM Lui, G Barton, M Clamp, S Searle
5 * This file is part of Jalview.
7 * Jalview is free software: you can redistribute it and/or
8 * modify it under the terms of the GNU General Public License
9 * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
11 * Jalview is distributed in the hope that it will be useful, but
12 * WITHOUT ANY WARRANTY; without even the implied warranty
13 * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
14 * PURPOSE. See the GNU General Public License for more details.
16 * You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
18 package jalview.ws.dbsources;
20 import jalview.ws.seqfetcher.DbSourceProxy;
23 * Flyweight class specifying retrieval of Seed family alignments from RFAM
25 * @author Lauren Michelle Lui
28 public class RfamSeed extends Rfam implements DbSourceProxy
38 * @see jalview.ws.dbsources.Rfam#getRFAMURL()
40 protected String getXFAMURL()
42 return "http://rfam.sanger.ac.uk/family/alignment/download/format?alnType=seed&nseLabels=0&format=stockholm&acc=";
44 // "http://rfam.janelia.org/cgi-bin/getalignment?type=seed&fmt=stockholm&acc=";
50 * @see jalview.ws.seqfetcher.DbSourceProxy#getDbName()
52 public String getDbName()
57 public String getDbSource()
59 return getDbName(); // so we have unique DbSource string.
62 public String getTestQuery()
65 } // http://rfam.janelia.org/cgi-bin/getdesc?acc=RF00014
67 public String getDbVersion()