jalview-jalopy.xml

   1 <?xml version="1.0" encoding="UTF-8"?>
   2 <!--
   3  * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)
   4  * Copyright (C) 2011 J Procter, AM Waterhouse, J Engelhardt, LM Lui, G Barton, M Clamp, S Searle
   5  *
   6  * This file is part of Jalview.
   7  *
   8  * Jalview is free software: you can redistribute it and/or
   9  * modify it under the terms of the GNU General Public License
  10  * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
  11  *
  12  * Jalview is distributed in the hope that it will be useful, but
  13  * WITHOUT ANY WARRANTY; without even the implied warranty
  14  * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
  15  * PURPOSE.  See the GNU General Public License for more details.
  16  *
  17  * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
  18 -->
  19 <jalopy>
  20     <general>
  21         <compliance>
  22             <version>14</version>
  23         </compliance>
  24         <style>
  25             <description>Sun Java Coding Convention</description>
  26             <name>Sun</name>
  27         </style>
  28     </general>
  29     <inspector>
  30         <enable>true</enable>
  31         <naming>
  32             <classes>
  33                 <abstract>[A-Z][a-zA-Z0-9]+</abstract>
  34                 <general>[A-Z][a-zA-Z0-9]+</general>
  35             </classes>
  36             <fields>
  37                 <default>[a-z][\w]+</default>
  38                 <defaultStatic>[a-z][\w]+</defaultStatic>
  39                 <defaultStaticFinal>[a-zA-Z][\w]+</defaultStaticFinal>
  40                 <private>[a-z][\w]+</private>
  41                 <privateStatic>[a-z][\w]+</privateStatic>
  42                 <privateStaticFinal>[a-zA-Z][\w]+</privateStaticFinal>
  43                 <protected>[a-z][\w]+</protected>
  44                 <protectedStatic>[a-z][\w]+</protectedStatic>
  45                 <protectedStaticFinal>[a-zA-Z][\w]+</protectedStaticFinal>
  46                 <public>[a-z][\w]+</public>
  47                 <publicStatic>[a-z][\w]+</publicStatic>
  48                 <publicStaticFinal>[a-zA-Z][\w]+</publicStaticFinal>
  49             </fields>
  50             <interfaces>[A-Z][a-zA-Z0-9]+</interfaces>
  51             <labels>\w+</labels>
  52             <methods>
  53                 <default>[a-z][\w]+</default>
  54                 <defaultStatic>[a-z][\w]+</defaultStatic>
  55                 <defaultStaticFinal>[a-z][\w]+</defaultStaticFinal>
  56                 <private>[a-z][\w]+</private>
  57                 <privateStatic>[a-z][\w]+</privateStatic>
  58                 <privateStaticFinal>[a-z][\w]+</privateStaticFinal>
  59                 <protected>[a-z][\w]+</protected>
  60                 <protectedStatic>[a-z][\w]+</protectedStatic>
  61                 <protectedStaticFinal>[a-z][\w]+</protectedStaticFinal>
  62                 <public>[a-z][\w]+</public>
  63                 <publicStatic>[a-z][\w]+</publicStatic>
  64                 <publicStaticFinal>[a-z][\w]+</publicStaticFinal>
  65             </methods>
  66             <packages>[a-z]+(?:\.[a-z]+)*</packages>
  67             <parameters>
  68                 <default>[a-z][\w]+</default>
  69                 <final>[a-z][\w]+</final>
  70             </parameters>
  71             <variables>[a-z][\w]*</variables>
  72         </naming>
  73         <tips>
  74             <adhereToNamingConvention>false</adhereToNamingConvention>
  75             <alwaysOverrideHashCode>false</alwaysOverrideHashCode>
  76             <avoidThreadGroups>false</avoidThreadGroups>
  77             <declareCollectionComment>false</declareCollectionComment>
  78             <dontIgnoreExceptions>false</dontIgnoreExceptions>
  79             <dontSubstituteObjectEquals>false</dontSubstituteObjectEquals>
  80             <neverDeclareException>false</neverDeclareException>
  81             <neverDeclareThrowable>false</neverDeclareThrowable>
  82             <neverInvokeWaitOutsideLoop>false</neverInvokeWaitOutsideLoop>
  83             <neverReturnZeroArrays>false</neverReturnZeroArrays>
  84             <neverUseEmptyFinally>false</neverUseEmptyFinally>
  85             <obeyContractEquals>false</obeyContractEquals>
  86             <overrideToString>false</overrideToString>
  87             <referToObjectsByInterface>false</referToObjectsByInterface>
  88             <replaceStructureWithClass>false</replaceStructureWithClass>
  89             <stringLiterallI18n>false</stringLiterallI18n>
  90             <useInterfaceOnlyForTypes>false</useInterfaceOnlyForTypes>
  91             <wrongCollectionComment>false</wrongCollectionComment>
  92         </tips>
  93     </inspector>
  94     <internal>
  95         <version>6</version>
  96     </internal>
  97     <messages>
  98         <priority>
  99             <general>30000</general>
 100             <parser>30000</parser>
 101             <parserJavadoc>30000</parserJavadoc>
 102             <printer>30000</printer>
 103             <printerJavadoc>30000</printerJavadoc>
 104             <transform>30000</transform>
 105         </priority>
 106         <showErrorStackTrace>true</showErrorStackTrace>
 107     </messages>
 108     <misc>
 109         <threadCount>1</threadCount>
 110     </misc>
 111     <printer>
 112         <alignment>
 113             <methodCallChain>true</methodCallChain>
 114             <parameterMethodDeclaration>false</parameterMethodDeclaration>
 115             <ternaryOperator>true</ternaryOperator>
 116             <variableAssignment>false</variableAssignment>
 117             <variableIdentifier>false</variableIdentifier>
 118         </alignment>
 119         <backup>
 120             <directory>bak</directory>
 121             <level>1</level>
 122         </backup>
 123         <blanklines>
 124             <after>
 125                 <block>1</block>
 126                 <braceLeft>0</braceLeft>
 127                 <class>1</class>
 128                 <declaration>0</declaration>
 129                 <footer>1</footer>
 130                 <header>0</header>
 131                 <interface>1</interface>
 132                 <lastImport>2</lastImport>
 133                 <method>1</method>
 134                 <package>1</package>
 135             </after>
 136             <before>
 137                 <block>1</block>
 138                 <braceRight>0</braceRight>
 139                 <caseBlock>1</caseBlock>
 140                 <comment>
 141                     <javadoc>1</javadoc>
 142                     <multiline>1</multiline>
 143                     <singleline>1</singleline>
 144                 </comment>
 145                 <controlStatement>1</controlStatement>
 146                 <declaration>1</declaration>
 147                 <footer>0</footer>
 148                 <header>0</header>
 149             </before>
 150             <keepUpTo>1</keepUpTo>
 151         </blanklines>
 152         <braces>
 153             <empty>
 154                 <cuddle>false</cuddle>
 155                 <insertStatement>false</insertStatement>
 156             </empty>
 157             <insert>
 158                 <dowhile>false</dowhile>
 159                 <for>false</for>
 160                 <ifelse>true</ifelse>
 161                 <while>false</while>
 162             </insert>
 163             <remove>
 164                 <block>true</block>
 165                 <dowhile>false</dowhile>
 166                 <for>false</for>
 167                 <ifelse>false</ifelse>
 168                 <while>false</while>
 169             </remove>
 170             <treatDifferent>
 171                 <methodClass>false</methodClass>
 172                 <methodClassIfWrapped>false</methodClassIfWrapped>
 173             </treatDifferent>
 174         </braces>
 175         <chunks>
 176             <blanklines>true</blanklines>
 177             <comments>true</comments>
 178         </chunks>
 179         <comments>
 180             <format>
 181                 <multiline>false</multiline>
 182             </format>
 183             <javadoc>
 184                 <check>
 185                     <innerclass>true</innerclass>
 186                     <tags>true</tags>
 187                     <throwsTags>true</throwsTags>
 188                 </check>
 189                 <fieldsShort>true</fieldsShort>
 190                 <generate>
 191                     <class>5</class>
 192                     <constructor>5</constructor>
 193                     <field>5</field>
 194                     <method>5</method>
 195                 </generate>
 196                 <parseComments>false</parseComments>
 197                 <tags>
 198                     <in-line />
 199                     <standard />
 200                 </tags>
 201                 <templates>
 202                     <method>
 203                         <bottom> */</bottom>
 204                         <exception> * @throws $exceptionType$ TODO: DOCUMENT ME!</exception>
 205                         <param> * @param $paramType$ TODO: DOCUMENT ME!</param>
 206                         <return> * @return TODO: DOCUMENT ME!</return>
 207                         <top>/**| * TODO: DOCUMENT ME!</top>
 208                     </method>
 209                 </templates>
 210             </javadoc>
 211             <remove>
 212                 <javadoc>false</javadoc>
 213                 <multiline>false</multiline>
 214                 <singleline>false</singleline>
 215             </remove>
 216             <separator>
 217                 <fillCharacter>-</fillCharacter>
 218                 <insert>false</insert>
 219                 <insertRecursive>false</insertRecursive>
 220                 <text>
 221                     <class>Inner Classes</class>
 222                     <constructor>Constructors</constructor>
 223                     <field>Instance fields</field>
 224                     <initializer>Instance initializers</initializer>
 225                     <interface>Inner Interfaces</interface>
 226                     <method>Methods</method>
 227                     <static>Static fields/initializers</static>
 228                 </text>
 229             </separator>
 230         </comments>
 231         <environment />
 232         <footer>
 233             <keys />
 234             <smartMode>0</smartMode>
 235             <use>false</use>
 236         </footer>
 237         <header>
 238             <keys />
 239             <smartMode>0</smartMode>
 240             <use>false</use>
 241         </header>
 242         <history>
 243             <policy>disabled</policy>
 244         </history>
 245         <imports>
 246             <grouping>
 247                 <defaultDepth>3</defaultDepth>
 248                 <packages>*:0|gnu:2|java:2|javax:2</packages>
 249             </grouping>
 250             <policy>disabled</policy>
 251             <sort>true</sort>
 252         </imports>
 253         <indentation>
 254             <caseFromSwitch>true</caseFromSwitch>
 255             <continuation>
 256                 <block>true</block>
 257                 <operator>false</operator>
 258             </continuation>
 259             <firstColumnComments>true</firstColumnComments>
 260             <label>false</label>
 261             <policy>
 262                 <deep>false</deep>
 263             </policy>
 264             <sizes>
 265                 <braceCuddled>1</braceCuddled>
 266                 <braceLeft>1</braceLeft>
 267                 <braceRight>0</braceRight>
 268                 <braceRightAfter>1</braceRightAfter>
 269                 <continuation>4</continuation>
 270                 <deep>55</deep>
 271                 <extends>-1</extends>
 272                 <general>4</general>
 273                 <implements>-1</implements>
 274                 <leading>0</leading>
 275                 <tabs>8</tabs>
 276                 <throws>-1</throws>
 277                 <trailingComment>1</trailingComment>
 278             </sizes>
 279             <tabs>
 280                 <enable>false</enable>
 281                 <onlyLeading>false</onlyLeading>
 282             </tabs>
 283         </indentation>
 284         <misc>
 285             <arrayBracketsAfterIdent>false</arrayBracketsAfterIdent>
 286             <forceFormatting>false</forceFormatting>
 287             <insertExpressionParentheses>true</insertExpressionParentheses>
 288             <insertLoggingConditional>false</insertLoggingConditional>
 289             <insertTrailingNewline>true</insertTrailingNewline>
 290             <insertUID>false</insertUID>
 291         </misc>
 292         <sorting>
 293             <declaration>
 294                 <class>false</class>
 295                 <constructor>false</constructor>
 296                 <enable>false</enable>
 297                 <interface>false</interface>
 298                 <method>false</method>
 299                 <order>static|field|initializer|constructor|method|interface|class</order>
 300                 <variable>false</variable>
 301             </declaration>
 302             <modifier>
 303                 <enable>false</enable>
 304                 <order>public|protected|private|abstract|static|final|synchronized|transient|volatile|native|strictfp</order>
 305             </modifier>
 306         </sorting>
 307         <whitespace>
 308             <after>
 309                 <comma>true</comma>
 310                 <semicolon>true</semicolon>
 311                 <typeCast>true</typeCast>
 312             </after>
 313             <before>
 314                 <braces>true</braces>
 315                 <brackets>false</brackets>
 316                 <bracketsTypes>false</bracketsTypes>
 317                 <caseColon>false</caseColon>
 318                 <operator>
 319                     <not>false</not>
 320                 </operator>
 321                 <parentheses>
 322                     <methodCall>false</methodCall>
 323                     <methodDeclaration>false</methodDeclaration>
 324                     <statement>true</statement>
 325                 </parentheses>
 326             </before>
 327             <padding>
 328                 <braces>true</braces>
 329                 <brackets>false</brackets>
 330                 <operator>
 331                     <assignment>true</assignment>
 332                     <bitwise>true</bitwise>
 333                     <logical>true</logical>
 334                     <mathematical>true</mathematical>
 335                     <relational>true</relational>
 336                     <shift>true</shift>
 337                 </operator>
 338                 <parenthesis>false</parenthesis>
 339                 <typeCast>false</typeCast>
 340             </padding>
 341         </whitespace>
 342         <wrapping>
 343             <always>
 344                 <after>
 345                     <arrayElement>0</arrayElement>
 346                     <braceRight>false</braceRight>
 347                     <extendsTypes>false</extendsTypes>
 348                     <implementsTypes>false</implementsTypes>
 349                     <label>true</label>
 350                     <methodCallChained>false</methodCallChained>
 351                     <ternaryOperator>
 352                         <first>false</first>
 353                         <second>false</second>
 354                     </ternaryOperator>
 355                     <throwsTypes>false</throwsTypes>
 356                 </after>
 357                 <before>
 358                     <braceLeft>false</braceLeft>
 359                     <extends>false</extends>
 360                     <implements>false</implements>
 361                     <throws>false</throws>
 362                 </before>
 363                 <parameter>
 364                     <methodCall>false</methodCall>
 365                     <methodCallNested>false</methodCallNested>
 366                     <methodDeclaration>false</methodDeclaration>
 367                 </parameter>
 368             </always>
 369             <general>
 370                 <beforeOperator>true</beforeOperator>
 371                 <enable>true</enable>
 372                 <lineLength>80</lineLength>
 373             </general>
 374             <ondemand>
 375                 <after>
 376                     <assignment>false</assignment>
 377                     <leftParenthesis>false</leftParenthesis>
 378                     <parameter>false</parameter>
 379                     <types>
 380                         <extends>false</extends>
 381                         <implements>false</implements>
 382                         <throws>false</throws>
 383                     </types>
 384                 </after>
 385                 <before>
 386                     <rightParenthesis>false</rightParenthesis>
 387                 </before>
 388                 <groupingParentheses>false</groupingParentheses>
 389             </ondemand>
 390         </wrapping>
 391     </printer>
 392 </jalopy>
 393