1 action.refresh_services = Refresh Services
2 action.reset_services = Reset Services
3 action.merge_results = Merge Results
4 action.load_scheme = Load scheme
5 action.save_scheme = Save scheme
6 label.scheme_changed = Changes to scheme ''{0}'' have not been saved.<br><br>Save changes, or continue without saving to make a new colour scheme.
7 label.save_changes = Save Changes
8 label.dont_save_changes = Don't Save
9 action.save_image = Save Image
11 action.show_html_source = Show HTML Source
12 action.print = Print...
13 action.web_service = Web Service
15 action.cancel_job = Cancel Job
16 action.start_job = Start Job
17 action.revert = Revert
18 action.move_down = Move Down
19 action.move_up = Move Up
20 action.remove_return_datatype = Remove return datatype
21 action.add_return_datatype = Add return datatype
22 action.remove_input_parameter = Remove selected input parameter
23 action.add_input_parameter = Add input parameter
26 action.open_file = Open file
27 action.show_unconserved = Show Unconserved
28 action.open_new_alignment = Open new alignment
29 action.raise_associated_windows = Raise Associated Windows
30 action.minimize_associated_windows = Minimize Associated Windows
31 action.close_all = Close all
32 action.load_project = Load Project
33 action.save_project = Save Project
34 action.save_project_as = Save Project as...
36 label.quit_jalview = Quit Jalview?
37 action.expand_views = Expand Views
38 action.gather_views = Gather Views
39 action.page_setup = Page Setup...
40 action.reload = Reload
43 action.cancel = Cancel
44 action.create = Create
45 action.update = Update
46 action.delete = Delete
48 action.accept = Accept
49 action.select_ddbb = --- Select Database ---
53 action.remove_left = Remove left
54 action.remove_right = Remove right
55 action.remove_empty_columns = Remove Empty Columns
56 action.remove_all_gaps = Remove All Gaps
57 action.left_justify_alignment = Left Justify Alignment
58 action.right_justify_alignment = Right Justify Alignment
61 action.by_pairwise_id = By Pairwise Identity
63 action.by_evalue = By E-Value
64 action.by_bit_score = By Bit Score
65 action.by_length = By Length
66 action.by_group = By Group
67 action.unmark_as_reference = Unmark as Reference
68 action.set_as_reference = Set as Reference
69 action.remove = Remove
70 action.remove_redundancy = Remove Redundancy...
71 action.pairwise_alignment = Pairwise Alignment
72 action.user_defined = User Defined...
73 action.by_conservation = By Conservation
75 action.show_gaps = Show Gaps
76 action.show_hidden_markers = Show Hidden Markers
78 action.undefine_groups = Undefine Groups
79 action.make_groups_selection = Make Groups For Selection
83 action.scale_above = Scale Above
84 action.scale_left = Scale Left
85 action.scale_right = Scale Right
86 action.by_tree_order = By Tree Order
88 action.calculate_tree = Calculate Tree...
89 action.calculate_tree_pca = Calculate Tree or PCA...
91 action.by_annotation = By Annotation...
92 action.invert_sequence_selection = Invert Sequence Selection
93 action.invert_column_selection = Invert Column Selection
97 action.set_defaults = Defaults
98 action.create_group = Create Group
99 action.remove_group = Remove Group
100 action.edit_group = Edit Group
101 action.border_colour = Border colour
102 action.edit_new_group = Edit New Group
103 action.hide_sequences = Hide Sequences
104 action.add_background_frequencies = Add Background Frequencies
105 action.sequences = Sequences
107 action.ids_sequences = IDS and sequences
108 action.reveal_all = Reveal All
109 action.reveal_sequences = Reveal Sequences
110 action.find_all = Find all
111 action.find_next = Find next
114 action.annotations = Annotations
115 action.change_params = Change Parameters
117 action.apply_threshold_all_groups = Apply threshold to all groups
118 action.apply_all_groups = Apply to all Groups
119 action.by_chain = By Chain
120 action.by_sequence = By Sequence
121 action.paste_annotations = Paste Annotations
122 action.format = Format
123 action.select = Select
124 action.new_view = New View
125 action.new_structure_view_with = Open new structure view with {0}
128 action.save_as = Save as...
130 action.change_font = Change Font
131 action.change_font_tree_panel = Change Font (Tree Panel)
132 action.colour = Colour
133 action.calculate = Calculate
134 action.select_all = Select all
135 action.select_highlighted_columns = Select Highlighted Columns
136 tooltip.select_highlighted_columns = Press B to mark highlighted columns, Ctrl-(or Cmd)-B to toggle, and Alt-B to mark all but highlighted columns
137 action.deselect_all = Deselect all
138 action.invert_selection = Invert selection
139 action.filter_by_evalue = Filter by E-Value
140 action.filter_by_score = Filter by Score
141 action.using_jmol = Using Jmol
142 action.undo_changes_to_feature_settings = Undo all unapplied changes to feature settings
143 action.undo_changes_to_feature_settings_and_close_the_dialog = Undo all pending changes and close the feature settings dialog
145 action.group_link = Group Link
146 action.show_chain = Show Chain
147 action.show_group = Show Group
148 action.fetch_db_references = Fetch DB References
149 action.view_flanking_regions = Show flanking regions
150 label.view_flanking_regions = Show sequence data either side of the subsequences involved in this alignment
151 label.structures_manager = Structures Manager
154 label.input_file_url = Enter URL or Input File
155 label.select_feature = Select feature
158 label.name_param = Name: {0}
160 label.group\: = Group:
161 label.group_name = Group Name
162 label.group_description = Group Description
163 label.edit_group_name_description = Edit Group Name/Description
164 label.colour = Colour:
165 label.description = Description
166 label.description\: = Description:
169 label.current_parameter_set_name = Current parameter set name:
170 label.service_action = Service Action:
171 label.post_url = POST URL:
172 label.url_suffix = URL Suffix
173 label.per_seq = per Sequence
174 label.result_vertically_separable = Results are vertically separable
176 label.undo_command = Undo {0}
177 label.redo_command = Redo {0}
178 label.principal_component_analysis = Principal Component Analysis
179 label.average_distance_identity = Average Distance Using % Identity
180 label.neighbour_joining_identity = Neighbour Joining Using % Identity
181 label.choose_calculation = Choose Calculation
182 label.calc_title = {0} Using {1}
183 label.tree_calc_av = Average Distance
184 label.tree_calc_nj = Neighbour Joining
185 label.score_model_pid = % Identity
186 label.score_model_blosum62 = BLOSUM62
187 label.score_model_pam250 = PAM 250
188 label.score_model_smithwatermanscore = Score between two sequences aligned with Smith-Waterman with default Peptide/Nucleotide matrix
189 label.score_model_sequencefeaturesimilarity = Distance measure of average number of features not shared at sequence positions
190 label.score_model_conservation = Physicochemical property conservation
191 label.score_model_enhconservation = Physicochemical property conservation
192 label.status_bar = Status bar
193 label.out_to_textbox = Output to Textbox
194 label.occupancy = Occupancy
195 # delete Clustal - use FileFormat name instead
196 label.clustal = Clustal
197 # label.colourScheme_<schemeName> as in JalviewColourScheme, spaces removed
198 label.colourScheme_clustal = Clustalx
199 label.colourScheme_blosum62 = BLOSUM62 Score
200 label.colourScheme_%identity = Percentage Identity
201 label.colourScheme_zappo = Zappo
202 label.colourScheme_taylor = Taylor
203 label.colourScheme_hydrophobic = Hydrophobicity
204 label.colourScheme_helixpropensity = Helix Propensity
205 label.colourScheme_strandpropensity = Strand Propensity
206 label.colourScheme_turnpropensity = Turn Propensity
207 label.colourScheme_buriedindex = Buried Index
208 label.colourScheme_purine/pyrimidine = Purine/Pyrimidine
209 label.colourScheme_nucleotide = Nucleotide
210 label.colourScheme_hmmer-uniprot = HMMER profile v global background
211 label.colourScheme_hmmer-alignment = HMMER profile v alignment background
212 label.colourScheme_hmm_match_score = HMM Match Score
213 label.colourScheme_t-coffeescores = T-Coffee Scores
214 label.colourScheme_rnahelices = By RNA Helices
215 label.colourScheme_sequenceid = Sequence ID Colour
220 label.pileup = Pileup
222 label.average_distance_blosum62 = Average Distance Using BLOSUM62
223 label.neighbour_blosum62 = Neighbour Joining Using BLOSUM62
224 label.show_annotations = Show annotations
225 label.hide_annotations = Hide annotations
226 label.show_all_seq_annotations = Show sequence related
227 label.hide_all_seq_annotations = Hide sequence related
228 label.show_all_al_annotations = Show alignment related
229 label.hide_all_al_annotations = Hide alignment related
230 label.hide_all = Hide all
231 label.add_reference_annotations = Add reference annotations
232 label.find_tip = Search alignment, selection or sequence ids for a subsequence (ignoring gaps).<br>Accepts regular expressions - search Help for 'regex' for details.
233 label.colour_text = Colour Text
234 label.show_non_conserved = Show nonconserved
235 label.overview_window = Overview Window
237 label.above_identity_threshold = Above Identity Threshold
238 label.show_sequence_features = Show Sequence Features
239 label.nucleotide = Nucleotide
240 label.protein = Protein
241 label.nucleotides = Nucleotides
242 label.proteins = Proteins
244 label.to_new_alignment = To New Alignment
245 label.to_this_alignment = Add To This Alignment
246 label.apply_colour_to_all_groups = Apply Colour To All Groups
247 label.modify_identity_threshold = Modify Identity Threshold...
248 label.modify_conservation_threshold = Modify Conservation Threshold...
249 label.input_from_textbox = Input from textbox
250 label.centre_column_labels = Centre column labels
251 label.automatic_scrolling = Automatic Scrolling
252 label.documentation = Documentation
253 label.about = About...
254 label.show_sequence_limits = Show Sequence Limits
255 action.feature_settings = Feature Settings...
256 label.all_columns = All Columns
257 label.all_sequences = All Sequences
258 label.selected_columns = Selected Columns
259 label.selected_sequences = Selected Sequences
260 label.except_selected_sequences = All except selected sequences
261 label.all_but_selected_region = All but Selected Region (Shift+Ctrl+H)
262 label.selected_region = Selected Region
263 label.all_sequences_columns = All Sequences and Columns
264 label.hide_selected_annotations = Hide selected annotations
265 label.show_selected_annotations = Show selected annotations
266 label.group_consensus = Group Consensus
267 label.group_conservation = Group Conservation
268 label.show_consensus_histogram = Show Consensus Histogram
269 label.show_consensus_logo = Show Consensus Logo
270 label.norm_consensus_logo = Normalise Consensus Logo
271 label.apply_all_groups = Apply to all groups
272 label.autocalculated_annotation = Autocalculated Annotation
273 label.show_first = Show first
274 label.show_last = Show last
275 label.struct_from_pdb = Process secondary structure from PDB
276 label.use_rnaview = Use RNAView for secondary structure
277 label.autoadd_secstr = Add secondary structure annotation to alignment
278 label.autoadd_temp = Add Temperature Factor annotation to alignment
279 label.structure_viewer = Default structure viewer
280 label.double_click_to_browse = Double-click to browse for file
281 label.viewer_path = Path to {0} program
282 label.viewer_path_tip = Jalview will first try any path entered here, else standard installation locations.<br>Double-click to browse for file.
283 label.invalid_viewer_path = Path not found or not executable
284 label.viewer_missing = Structure viewer not found.<br/>Please enter the path to the executable (if installed),<br/>or download and install the program.
285 label.open_viewer_failed = Error opening {0} - is it installed?\nCheck path in Preferences, Structure
286 label.min_colour = Minimum Colour
287 label.max_colour = Maximum Colour
288 label.no_colour = No Colour
289 label.use_original_colours = Use Original Colours
290 label.threshold_minmax = Threshold is min/max
291 label.represent_group_with = Represent Group with {0}
292 label.selection = Selection
293 label.group_colour = Group Colour
294 label.sequence = Sequence
295 label.view_pdb_structure = View PDB Structure
296 label.min_value = Min value
297 label.max_value = Max value
298 label.no_value = No value
299 label.new_feature = New Feature
300 label.match_case = Match Case
301 label.view_alignment_editor = View in alignment editor
302 label.labels = Labels
303 label.output_values = Output Values...
304 label.output_points = Output points...
305 label.output_transformed_points = Output transformed points
306 label.input_data = Input Data...
307 label.nucleotide_matrix = Nucleotide matrix
308 label.protein_matrix = Protein matrix
309 label.show_bootstrap_values = Show Bootstrap Values
310 label.show_distances = Show distances
311 label.mark_unassociated_leaves = Mark Unassociated Leaves
312 label.fit_to_window = Fit To Window
313 label.newick_format = Newick Format
314 label.select_newick_like_tree_file = Select a newick-like tree file
315 label.colours = Colours
316 label.view_mapping = View Mapping
317 label.wireframe = Wireframe
318 label.depthcue = Depthcue
319 label.z_buffering = Z Buffering
320 label.charge_cysteine = Charge & Cysteine
321 label.all_chains_visible = All Chains Visible
322 label.successfully_added_features_alignment = Successfully added features to alignment
323 label.keyboard_editing_mode = Keyboard editing mode is {0}
324 label.paste_features_annotations_Tcoffee_here = Paste your features / annotations / T-coffee score file here.
325 label.removed_columns = Removed {0} columns.
326 label.removed_empty_columns = Removed {0} empty columns.
327 label.paste_newick_tree_file = Paste your Newick tree file here.
328 label.order_by_params = Order by {0}
329 label.html_content = <html>{0}</html>
330 label.paste_pdb_file= Paste your PDB file here.
331 label.paste_pdb_file_for_sequence = Paste PDB file for sequence {0}
332 label.could_not_parse_newick_file = Could not parse Newick file\!\n {0}
333 label.successfully_pasted_tcoffee_scores_to_alignment= Successfully pasted T-Coffee scores to alignment.
334 label.failed_add_tcoffee_scores = Failed to add T-Coffee scores:
335 label.successfully_pasted_annotation_to_alignment= Successfully pasted annotation to alignment.
336 label.couldnt_parse_pasted_text_as_valid_annotation_feature_GFF_tcoffee_file = Couldn't parse pasted text as a valid annotation, feature, GFF, or T-Coffee score file
337 label.successfully_pasted_alignment_file = Successfully pasted alignment file
338 label.paste_your_alignment_file = Paste your alignment file here
339 label.paste_your = Paste your
340 label.finished_searching = Finished searching
341 label.subsequence_matches_found = {0} subsequence matches found
342 label.search_results= Search results {0} : {1}
343 label.found_match_for = Found match for {0}
347 label.calculating = Calculating....
348 label.modify_conservation_visibility = Modify conservation visibility
349 label.colour_residues_above_occurrence = Colour residues above % occurrence
350 label.set_this_label_text = set this label text
351 label.sequences_from = Sequences from {0}
352 label.successfully_loaded_file = Successfully loaded file {0}
353 label.successfully_loaded_matrix = Successfully loaded score matrix {0}
354 label.successfully_saved_to_file_in_format = Successfully saved to file: {0} in {1} format.
355 label.copied_sequences_to_clipboard = Copied {0} sequences to clipboard.
356 label.check_file_matches_sequence_ids_alignment = Check that the file matches sequence IDs in the alignment.
357 label.problem_reading_tcoffee_score_file = Problem reading T-COFFEE score file
358 label.source_to_target = {0} ... {1}
359 label.per_sequence_only= Per-sequence only
360 label.to_file = to File
361 label.to_textbox = to Textbox
362 label.jalview = Jalview
363 label.csv_spreadsheet = CSV (Spreadsheet)
364 label.status = Status
365 label.channels = Channels
366 label.channel_title_item_count = {0} ({1})
367 label.blog_item_published_on_date = {0} {1}
368 label.groovy_console = Groovy Console...
369 label.lineart = Lineart
370 label.dont_ask_me_again = Don't ask me again
371 label.select_character_rendering_style = {0} character rendering style
372 label.select_character_style_title = {0} Rendering options
373 label.invert_selection = Invert Selection
374 label.optimise_order = Optimise Order
375 label.seq_sort_by_score = Sequence sort by Score
376 label.load_colours = Load Colours
377 label.save_colours = Save Colours
378 label.load_colours_tooltip = Load feature colours and filters from file
379 label.save_colours_tooltip = Save feature colours and filters to file
380 label.selected_database_to_fetch_from = Selected {0} database {1} to fetch from {2}
381 label.database_param = Database: {0}
382 label.example = Example
383 label.example_param = Example: {0}
384 label.select_file_format_before_saving = You must select a file format before saving!
385 label.file_format_not_specified = File format not specified
386 label.couldnt_save_file = Couldn''t save file: {0}
387 label.error_saving_file = Error Saving File
388 label.remove_from_default_list = Remove from default list?
389 label.remove_user_defined_colour = Remove user defined colour
390 label.you_must_select_least_two_sequences = You must select at least 2 sequences.
391 label.invalid_selection = Invalid Selection
392 label.sequence_selection_insufficient = Sequence selection insufficient
393 label.you_need_at_least_n_sequences = You need to select at least {0} sequences
394 label.not_enough_sequences = Not enough sequences
395 label.selected_region_to_tree_may_only_contain_residues_or_gaps = The selected region to create a tree may\nonly contain residues or gaps.\nTry using the Pad function in the edit menu,\nor one of the multiple sequence alignment web services.
396 label.sequences_selection_not_aligned = Sequences in selection are not aligned
397 label.problem_reading_tree_file = Problem reading tree file
398 label.possible_problem_with_tree_file = Possible problem with tree file
399 label.select_at_least_three_bases_in_at_least_one_sequence_to_cDNA_translation = Please select at least three bases in at least one sequence in order to perform a cDNA translation.
400 label.translation_failed = Translation Failed
401 label.error_when_translating_sequences_submit_bug_report = Unfortunately, something went wrong when translating your sequences.\nPlease take a look in the Jalview java console\nand submit a bug report including the stacktrace.
402 label.implementation_error = Implementation error:
403 label.automatically_associate_structure_files_with_sequences_same_name = Do you want to automatically associate the {0} structure file(s) with sequences in the alignment that have the same name?
404 label.automatically_associate_structure_files_by_name = Automatically Associate Structure files by name
405 label.ignore_unmatched_dropped_files_info = <html>Do you want to <em>ignore</em> the {0} files whose names did not match any sequence IDs ?</html>
406 label.ignore_unmatched_dropped_files = Ignore unmatched dropped files?
407 label.view_name_original = Original
408 label.enter_view_name = Enter View Name
409 label.enter_label = Enter label
410 label.enter_label_for_the_structure = Enter a label for the structure
411 label.pdb_entries_couldnt_be_retrieved = The following pdb entries could not be retrieved from the PDB\:\n{0}\nPlease retry, or try downloading them manually.
412 label.couldnt_load_file = Couldn't load file
413 label.couldnt_find_pdb_id_in_file = Couldn't find a PDB id in the file supplied. Please enter an Id to identify this structure.
414 label.no_pdb_id_in_file = No PDB Id in File
415 label.couldnt_read_pasted_text = Couldn't read the pasted text {0}
416 label.error_parsing_text = Error parsing text
417 label.input_alignment_from_url = Input Alignment From URL
418 label.input_alignment = Input Alignment
419 label.vamsas_document_import_failed = Vamsas Document Import Failed
420 label.couldnt_locate = Couldn''t locate {0}
421 label.url_not_found = URL not found
422 label.new_sequence_url_link = New sequence URL link
423 label.error_retrieving_data = Error Retrieving Data
424 label.user_colour_scheme_must_have_name = User colour scheme must have a name
425 label.no_name_colour_scheme = No name for colour scheme
426 label.invalid_url = Invalid URL !
427 label.error_loading_file = Error loading file
428 label.problems_opening_file = Encountered problems opening {0}!!
429 label.file_open_error = File open error
430 label.colour_scheme_exists_overwrite = Colour scheme {0} exists.\nContinue saving colour scheme as {1}?"
431 label.duplicate_scheme_name = Duplicate scheme name
432 label.jalview_new_questionnaire = There is a new Questionnaire available. Would you like to complete it now ?\n
433 label.jalview_user_survey = Jalview User Survey
434 label.alignment_properties = Alignment Properties: {0}
435 label.alignment_props = Alignment Properties
436 label.input_cut_paste = Cut & Paste Input
437 label.input_cut_paste_params = Cut & Paste Input - {0}
438 label.alignment_output_command = Alignment output - {0}
439 label.annotations = Annotations
440 label.structure_options = Structure Options
441 label.features = Features
442 label.overview_params = Overview {0}
443 label.paste_newick_file = Paste Newick file
444 label.load_tree_from_file = From File -
445 label.colour_by_annotation = Colour by Annotation
446 label.selection_output_command = Selection output - {0}
447 label.annotation_for_displayid = <p><h2>Annotation for {0} </h2></p><p>
448 label.pdb_sequence_mapping = PDB - Sequence Mapping
449 label.pca_details = PCA details
450 label.redundancy_threshold_selection = Redundancy threshold selection
451 label.user_defined_colours = User defined colours
452 label.jalviewLite_release = JalviewLite - Release {0}
453 label.jaview_build_date = Build date: {0}
454 label.jalview_authors_1 = Authors: Jim Procter, Andrew Waterhouse, Mungo Carstairs, Tochukwu Ofoegbu, Lauren Lui, Jan Engelhardt,
455 label.jalview_authors_2 = Natasha Sherstnev, Daniel Barton, Michele Clamp, James Cuff, Steve Searle, David Martin & Geoff Barton.
456 label.jalview_dev_managers = Development managed by The Barton Group, University of Dundee, Scotland, UK.
457 label.jalview_distribution_lists = For help, see the FAQ at www.jalview.org and/or join the jalview-discuss@jalview.org mailing list
458 label.jalview_please_cite = If you use Jalview, please cite:
459 label.jalview_cite_1_authors = Waterhouse, A.M., Procter, J.B., Martin, D.M.A, Clamp, M. and Barton, G. J. (2009)
460 label.jalview_cite_1_title = Jalview Version 2 - a multiple sequence alignment editor and analysis workbench
461 label.jalview_cite_1_ref = Bioinformatics doi: 10.1093/bioinformatics/btp033
462 label.right_click = Right click
463 label.to_add_annotation = to add annotation
464 label.alignment_has_no_annotations = Alignment has no annotations
465 label.retrieving_pdb_data = Retrieving PDB data...
467 label.no_features_added_to_this_alignment = No Features added to this alignment!!
468 label.features_can_be_added_from_searches_1 = (Features can be added from searches or
469 label.features_can_be_added_from_searches_2 = from Jalview / GFF features files)
470 label.calculating_pca= Calculating PCA
471 label.jalview_cannot_open_file = Jalview can't open file
472 label.jalview_applet = Jalview applet
473 label.loading_data = Loading data
474 label.memory_stats = Total Free Memory: {0} MB; Max Memory: {1} MB; {2} %
475 label.calculating_tree = Calculating tree
476 label.state_queueing = queuing
477 label.state_running = running
478 label.state_completed = finished
479 label.state_job_cancelled = job cancelled!!
480 label.state_job_error = job error!
481 label.server_error_try_later = Server Error! (try later)
482 label.error_loading_pdb_data = Error loading PDB data!!
483 label.fetching_pdb_data = Fetching PDB data...
484 label.structure_type = Structure type
485 label.settings_for_type = Settings for {0}
486 label.view_full_application = View in Full Application
487 label.load_associated_tree = Load Associated Tree...
488 label.load_features_annotations = Load Features/Annotations...
489 label.load_vcf = Load SNP variants from plain text or indexed VCF data
490 label.load_vcf_file = Load VCF File
491 label.searching_vcf = Loading VCF variants...
492 label.added_vcf = Added {0} VCF variants to {1} sequence(s)
493 label.export_features = Export Features...
494 label.export_annotations = Export Annotations...
495 label.to_upper_case = To Upper Case
496 label.to_lower_case = To Lower Case
497 label.toggle_case = Toggle Case
498 label.edit_name_description = Edit Name/Description...
499 label.create_sequence_feature = Create Sequence Feature...
500 label.edit_sequence = Edit Sequence
501 label.edit_sequences = Edit Sequences
502 label.insert_gap = Insert 1 gap
503 label.insert_gaps = Insert {0} gaps
504 label.delete_gap = Delete 1 gap
505 label.delete_gaps = Delete {0} gaps
506 label.sequence_details = Sequence Details
507 label.viewer_help = {0} Help
508 label.close_viewer = Close Viewer
509 label.confirm_close_viewer = This will close Jalview''s connection to {0}.<br>Do you want to close the {1} window as well?
511 label.sort_by = Sort alignment by
512 label.sort_by_score = Sort by Score
513 label.sort_by_density = Sort by Density
514 label.sequence_sort_by_density = Sequence sort by Density
515 label.sort_ann_by = Sort annotations by
516 label.sort_annotations_by_sequence = Sort by sequence
517 label.sort_annotations_by_label = Sort by label
518 label.reveal = Reveal
519 label.hide_columns = Hide Columns
520 label.load_jalview_annotations = Load Jalview Annotations or Features File
521 label.load_tree_file = Load a tree file
522 label.retrieve_parse_sequence_database_records_alignment_or_selected_sequences = Retrieve and parse sequence database records for the alignment or the currently selected sequences
523 label.standard_databases = Standard Databases
524 label.fetch_embl_uniprot = Fetch from EMBL/EMBLCDS or Uniprot/PDB and any selected DAS sources
525 label.fetch_uniprot_references = Fetch Uniprot references
526 label.search_3dbeacons = 3D-Beacons Search
527 label.find_models_from_3dbeacons = Search 3D-Beacons for 3D structures and models
528 label.3dbeacons = 3D-Beacons
529 label.fetch_references_for = Fetch database references for {0} sequences ?
530 label.fetch_references_for_3dbeacons = 3D Beacons needs Uniprot References. Fetch database references for {0} sequences ?
531 label.reset_min_max_colours_to_defaults = Reset min and max colours to defaults from user preferences.
532 label.align_structures_using_linked_alignment_views = Superpose structures using {0} selected alignment view(s)
533 label.threshold_feature_display_by_score = Threshold the feature display by score.
534 label.threshold_feature_no_threshold = No Threshold
535 label.threshold_feature_above_threshold = Above Threshold
536 label.threshold_feature_below_threshold = Below Threshold
537 label.adjust_threshold = Adjust threshold
538 label.toggle_absolute_relative_display_threshold = Toggle between absolute and relative display threshold.
539 label.select_colour_minimum_value = Select Colour for Minimum Value
540 label.select_colour_maximum_value = Select Colour for Maximum Value
541 label.open_url_param = Open URL {0}
542 label.open_url_seqs_param = Open URL ({0}..) ({1} seqs)
543 label.load_pdb_file_associate_with_sequence = Load a PDB file and associate it with sequence {0}
544 label.reveal_hidden_columns = Reveal Hidden Columns with Right Mouse Button
545 label.dark_colour = Dark Colour
546 label.light_colour = Light Colour
547 label.highlightnode = Left click to select leaves.<br>Double-click to invert leaves.<br>Right click to change colour.
548 label.load_colour_scheme = Load colour scheme
549 label.copy_format_from = Copy format from
550 label.toggle_enabled_views = When enabled, allows many views to be selected.
551 label.select_all_views = Select all views
552 label.select_many_views = Select many views
553 label.edit_notes_parameter_set = Click to edit the notes for this parameter set.
554 label.open_local_file = Open local file
555 label.enable_automatically_sort_alignment_when_open_new_tree = Enable this to automatically sort<br>the alignment when you open<br> a new tree.
556 label.listen_for_selections = Listen for selections
557 label.selections_mirror_selections_made_same_sequences_other_views = When selected, selections in this view will mirror<br>selections made on the same sequences in other views.
558 label.toggle_sequence_visibility = Shift+H toggles sequence visiblity
559 label.toggle_columns_visibility = Ctrl+H toggles column visiblity.
560 label.toggles_visibility_hidden_selected_regions = H toggles visibility of hidden or selected regions
561 label.rename_tab_eXpand_reGroup= Right-click to rename tab <br> Press X to eXpand tabs, G to reGroup.
562 label.right_align_sequence_id = Right Align Sequence Id
563 label.sequence_id_tooltip = Sequence ID Tooltip
564 label.no_services = <No Services>
565 label.select_copy_raw_html = Select this if you want to copy raw html
566 label.from_url = from URL
567 label.any_trees_calculated_or_loaded_alignment_automatically_sort = When selected, any trees calculated or loaded onto the alignment will automatically sort the alignment
568 label.sort_with_new_tree = Sort With New Tree
569 label.from_textbox = from Textbox
570 label.window = Window
571 label.preferences = Preferences
573 label.fetch_sequences = Fetch Sequences
574 action.fetch_sequences = Fetch Sequences...
575 label.collect_garbage = Collect Garbage
576 label.show_memory_usage = Show Memory Usage
577 label.show_java_console = Show Java Console
578 label.show_jalview_news = Show Jalview News
579 label.take_snapshot = Take snapshot
580 label.monospaced_fonts_faster_to_render = Monospaced fonts are faster to render
581 label.anti_alias_fonts = Anti-alias Fonts (Slower to render)
582 label.monospaced_font= Monospaced
583 label.quality = Quality
584 label.maximize_window = Maximize Window
585 label.conservation = Conservation
586 label.consensus = Consensus
587 label.histogram = Histogram
589 label.non_positional_features = List Non-positional Features
590 label.database_references = List Database References
591 #label.share_selection_across_views = Share selection across views
592 #label.scroll_highlighted_regions = Scroll to highlighted regions
593 label.gap_symbol = Gap Symbol
594 label.prot_alignment_colour = Protein Alignment Colour
595 label.nuc_alignment_colour = Nucleotide Alignment Colour
596 label.address = Address
599 label.default_browser_unix = Default Browser (Unix)
600 label.send_usage_statistics = Send usage statistics
601 label.check_for_questionnaires = Check for questionnaires
602 label.check_for_latest_version = Check for latest version
603 label.url_linkfrom_sequence_id = URL link from Sequence ID
604 label.no_proxy = No proxy servers
605 label.system_proxy = System proxy servers (http={0}; https={1})
606 label.use_proxy_server = Use these proxy servers
607 label.auth_required = Authentication required
608 label.username = Username
609 label.password = Password
610 label.proxy_password_required = Proxy password required
611 label.not_stored = not stored in Preferences file
612 label.rendering_style = {0} rendering style
613 label.append_start_end = Append /start-end (/15-380)
614 label.full_sequence_id = Full Sequence Id
615 label.smooth_font = Smooth Font
616 label.autocalculate_consensus = AutoCalculate Consensus
617 label.pad_gaps = Pad Gaps
618 label.pad_gaps_when_editing = Pad Gaps When Editing
619 label.automatically_set_id_width = Automatically set ID width
620 label.figure_id_column_width = Figure ID column width
621 label.use_modeller_output = Use Modeller Output
622 label.wrap_alignment = Wrap Alignment
623 label.right_align_ids = Right Align Ids
624 label.sequence_name_italics = Italic Sequence Ids
625 label.open_overview = Open Overview
626 label.default_colour_scheme_for_alignment = Default Colour Scheme for alignment
627 label.annotation_shading_default = Annotation Shading Default
628 label.default_minimum_colour_annotation_shading = Default Minimum Colour for annotation shading
629 label.default_maximum_colour_annotation_shading = Default Maximum Colour for annotation shading
630 label.visual = Visual
631 label.connections = Connections
632 label.output = Output
633 label.editing = Editing
634 label.web_services = Web Services
635 label.right_click_to_edit_currently_selected_parameter = Right click to edit currently selected parameter.
636 label.let_jmol_manage_structure_colours = Let Jmol manage structure colours
637 label.fetch_chimera_attributes = Fetch Chimera attributes
638 label.fetch_chimera_attributes_tip = Copy Chimera attribute to Jalview feature
639 label.marks_leaves_tree_not_associated_with_sequence = Marks leaves of tree not associated with a sequence
640 label.index_web_services_menu_by_host_site = Index web services in menu by the host site
641 label.option_want_informed_web_service_URL_cannot_be_accessed_jalview_when_starts_up = Check this option if you want to be informed<br>when a web service URL cannot be accessed by Jalview<br>when it starts up
642 label.new_service_url = New Service URL
643 label.edit_service_url = Edit Service URL
644 label.delete_service_url = Delete Service URL
645 label.details = Details
646 label.options = Options
647 label.parameters = Parameters
648 label.proxy_servers = Proxy Servers
649 label.file_output = File Output
650 label.select_input_type = Select input type
651 label.set_options_for_type = Set options for type
652 label.data_input_parameters = Data input parameters
653 label.data_returned_by_service = Data returned by service
654 label.rsbs_encoded_service = RSBS Encoded Service
655 label.parsing_errors = Parsing errors
656 label.simple_bioinformatics_rest_services = Simple Bioinformatics Rest Services
657 label.web_service_discovery_urls = Web Service Discovery URLS
658 label.input_parameter_name = Input Parameter name
659 label.short_descriptive_name_for_service = Short descriptive name for service
660 label.function_service_performs = What kind of function the service performs (e.g. alignment, analysis, search, etc).
661 label.brief_description_service = Brief description of service
662 label.url_post_data_service = URL to post data to service. Include any special parameters needed here
663 label.optional_suffix = Optional suffix added to URL when retrieving results from service
664 label.preferred_gap_character = Which gap character does this service prefer?
665 label.gap_character = Gap character
666 label.move_return_type_up_order= Move return type up order
667 label.move_return_type_down_order= Move return type down order
668 label.update_user_parameter_set = Update this existing user parameter set
669 label.delete_user_parameter_set = Delete the currently selected user parameter set
670 label.create_user_parameter_set = Create a new parameter set with the current settings.
671 label.revert_changes_user_parameter_set = Undo all changes to the current parameter set
672 label.start_job_current_settings = Start Job with current settings
673 label.cancel_job_close_dialog = Close this dialog and cancel job
674 label.input_output = Input/Output
675 label.cut_paste = Cut'n'Paste
676 label.adjusting_parameters_for_calculation = Adjusting parameters for existing Calculation
677 label.2d_rna_structure_line = 2D RNA {0} (alignment)
678 label.2d_rna_sequence_name = 2D RNA - {0}
679 label.edit_name_and_description_current_group = Edit name and description of current group
680 label.from_file = From File
681 label.enter_pdb_id = Enter PDB Id
682 label.enter_pdb_id_tip = Enter PDB Id (or pdbid:chaincode)
683 label.text_colour = Text Colour...
684 label.structure = Structure
685 label.show_pdbstruct_dialog = 3D Structure Data...
686 label.view_rna_structure = VARNA 2D Structure
687 label.create_sequence_details_report_annotation_for = Annotation for {0}
688 label.sequence_details_for = Sequence Details for {0}
689 label.sequence_name = Sequence Name
690 label.sequence_description = Sequence Description
691 label.edit_sequence_name_description = Edit Sequence Name/Description
692 label.spaces_converted_to_underscores = Spaces have been converted to _
693 label.no_spaces_allowed_sequence_name = No spaces allowed in Sequence Name
694 label.select_outline_colour = Select Outline Colour
695 label.web_browser_not_found_unix = Unixers\: Couldn't find default web browser.\nAdd the full path to your browser in Preferences."
696 label.web_browser_not_found = Web browser not found
697 label.select_pdb_file_for = Select a PDB file for {0}
700 label.show_database_refs = Show Database Refs
701 label.show_non_positional_features = Show Non-Positional Features
702 label.save_png_image = Save As PNG Image
703 label.load_tree_for_sequence_set = Load a tree for this sequence set
704 label.export_image = Export Image
705 label.vamsas_store = VAMSAS store
706 label.translate_cDNA = Translate as cDNA
707 label.reverse = Reverse
708 label.reverse_complement = Reverse Complement
709 label.linked_view_title = Linked CDS and protein view
710 label.extract_scores = Extract Scores
711 label.get_cross_refs = Get Cross-References
712 label.sort_alignment_new_tree = Sort Alignment With New Tree
713 label.add_sequences = Add Sequences
714 label.new_window = New Window
715 label.split_window = Split Window
716 label.set_as_default = Set as Default
717 label.show_labels = Show labels
718 action.background_colour = Background Colour...
719 label.associate_nodes_with = Associate Nodes With
720 label.link_name = Link Name
721 label.pdb_file = PDB file
722 label.colour_with_jmol = Colour with Jmol
723 label.let_viewer_manage_structure_colours = Let viewer manage structure colours
724 label.colour_with_viewer = Colour in structure viewer
725 label.superpose_structures = Superpose Structures
726 error.superposition_failed = Superposition failed: {0}
727 label.insufficient_residues = Not enough aligned residues ({0}) to perform superposition
728 label.create_viewer_attributes = Write Jalview features
729 label.create_viewer_attributes_tip = Set structure residue attributes for Jalview features
730 label.attributes_set = {0} attribute values set on Chimera
731 label.sort_alignment_by_tree = Sort Alignment By Tree
732 label.mark_unlinked_leaves = Mark Unlinked Leaves
733 label.associate_leaves_with = Associate Leaves With
734 label.save_colour_scheme_with_unique_name_added_to_colour_menu = Save your colour scheme with a unique name and it will be added to the Colour menu
735 label.case_sensitive = Case Sensitive
736 label.lower_case_colour = Colour All Lower Case
737 label.lower_case_tip = Chosen colour applies to all lower case symbols
738 label.index_by_host = Index by Host
739 label.index_by_type = Index by Type
740 label.enable_jabaws_services = Enable JABAWS Services
741 label.display_warnings = Display Warnings
742 label.move_url_up = Move URL Up
743 label.move_url_down = Move URL Down
744 label.add_sbrs_definition = Add a SBRS Definition
745 label.edit_sbrs_definition = Edit SBRS Definition
746 label.delete_sbrs_definition = Delete SBRS Definition
747 label.your_sequences_have_been_verified = Your sequences have been verified against known sequence databases.\n(Use Calculate | Show flanking regions to show enclosing sequence.)\nTo preserve data changes, save your alignment.\n\n
748 label.sequences_updated = Sequences updated
749 label.dbref_search_completed = DBRef search completed
750 label.fetch_all_param = Fetch all {0}
751 label.paste_new_window = Paste To New Window
752 label.settings_for_param = Settings for {0}
753 label.view_params = View {0}
754 label.aacon_calculations = AACon Calculations
755 label.aacon_settings = Change AACon Settings...
756 tooltip.aacon_calculations = When checked, AACon calculations are updated automatically.
757 tooltip.aacon_settings = Modify settings for AACon calculations.
758 label.rnalifold_calculations = RNAAliFold Prediction
759 label.rnalifold_settings = Change RNAAliFold settings...
760 tooltip.rnalifold_calculations = When checked, RNA secondary structure predictions will be calculated for the alignment, and updated when edits are made.
761 tooltip.rnalifold_settings = Modify settings for the RNAAliFold prediction. Use this to hide or show different results of the RNA calculation, and change RNA folding parameters.
762 label.all_views = All Views
763 label.align_sequences_to_existing_alignment = Align sequences to an existing alignment
764 label.realign_with_params = Realign with {0}
765 label.calcname_with_default_settings = {0} with Defaults
766 label.action_with_default_settings = {0} with default settings
767 label.edit_settings_and_run = Edit settings and run...
768 label.view_and_change_parameters_before_alignment = View and change the parameters before alignment
769 label.run_with_preset_params = Run {0} with preset
770 label.view_and_change_parameters_before_running_calculation = View and change parameters before running calculation
771 label.view_documentation = View documentation
772 label.select_return_type = Select return type
773 label.translation_of_params = Translation of {0} (Table {1})
774 label.features_for_params = Features for - {0}
775 label.annotations_for_params = Annotations for - {0}
776 label.generating_features_for_params = Generating features for - {0}
777 label.generating_annotations_for_params = Generating annotations for - {0}
778 label.varna_params = VARNA - {0}
779 label.sequence_feature_settings = Sequence Feature Settings
780 label.sequence_feature_settings_for = Sequence Feature Settings for {0}
781 label.sequence_feature_settings_for_view = Sequence Feature Settings for view "{0}"
782 label.sequence_feature_settings_for_CDS_and_Protein = Sequence Feature Settings for CDS and Protein
783 label.pairwise_aligned_sequences = Pairwise Aligned Sequences
784 label.original_data_for_params = Original Data for {0}
785 label.points_for_params = Points for {0}
786 label.transformed_points_for_params = Transformed points for {0}
787 label.variable_color_for = Variable Feature Colour for {0}
788 label.select_background_colour = Select Background Colour
789 label.invalid_font = Invalid Font
790 label.separate_multiple_accession_ids = Enter one or more accession IDs separated by a semi-colon ";"
791 label.separate_multiple_query_values = Enter one or more {0}s separated by a semi-colon ";"
792 label.search_all = Enter one or more search values separated by a semi-colon ";" (Note: This searches the entire database)
793 label.replace_commas_semicolons = Replace commas with semi-colons
794 label.parsing_failed_syntax_errors_shown_below_param = Parsing failed. Syntax errors shown below {0}
795 label.parsing_failed_unrecoverable_exception_thrown_param = \nParsing failed. An unrecoverable exception was thrown\:\n {0}
796 label.example_query_param = Example query: {0}
797 label.enter_value_increase_conservation_visibility = Enter value to increase conservation visibility
798 label.enter_percentage_identity_above_which_colour_residues = Enter % identity above which to colour residues
799 label.wswublast_client_credits = To display sequence features an exact Uniprot id with 100% sequence identity match must be entered.\nIn order to display these features, try changing the names of your sequences to the ids suggested below.\n\nRunning WSWUBlast at EBI.\nPlease quote Pillai S., Silventoinen V., Kallio K., Senger M., Sobhany S., Tate J., Velankar S., Golovin A., Henrick K., Rice P., Stoehr P., Lopez R.\nSOAP-based services provided by the European Bioinformatics Institute.\nNucleic Acids Res. 33(1)\:W25-W28 (2005));
800 label.blasting_for_unidentified_sequence = BLASTing for unidentified sequences
801 label.select_columns_containing = Select columns containing
802 label.select_columns_not_containing = Select columns that do not contain
803 label.hide_columns_containing = Hide columns containing
804 label.hide_columns_not_containing = Hide columns that do not contain
805 option.trim_retrieved_seqs = Trim retrieved sequences
806 label.trim_retrieved_sequences = When the reference sequence is longer than the sequence that you are working with, only keep the relevant subsequences.
807 label.use_sequence_id_1 = Use $DB_ACCESSION$ or $DB_ACCESSION=/<regex>/=$
808 label.use_sequence_id_2 = to embed accession id in URL
809 label.use_sequence_id_3 = Use $SEQUENCE_ID$ similarly to embed sequence id
810 label.use_sequence_id_4 =
811 label.ws_parameters_for = Parameters for {0}
812 label.switch_server = Switch server
813 label.choose_jabaws_server = Choose a server for running this service
814 label.services_at = Services at {0}
815 label.rest_client_submit = {0} using {1}
816 label.fetch_retrieve_from =Retrieve from {0}</html>
817 label.fetch_retrieve_from_all_sources = Retrieve from all {0} sources in {1}<br>First is :{2}<html>
818 label.feature_settings_click_drag = Drag up or down to change render order.<br/>Double click to select columns containing feature.
819 label.transparency_tip = Adjust transparency to 'see through' feature colours.
820 label.opt_and_params_further_details = see further details by right-clicking
821 label.opt_and_params_show_brief_desc_image_link = <html>Click to show brief description<br><img src="{0}"/> Right click for further information.</html>
822 label.opt_and_params_show_brief_desc = <html>Click to show brief description<br></html>
823 label.adjusts_width_generated_eps_png = <html>Adjusts the width of the generated EPS or PNG file to ensure even the longest sequence ID or annotation label is displayed</html>
824 label.manually_specify_width_left_column = <html>Manually specify the width of the left hand column where sequence IDs and annotation labels will be rendered in exported alignment figures. This setting will be ignored if 'Automatically set ID width' is set</html>
825 label.job_created_when_checked = <html>When checked, a job is created for every sequence in the current selection.</html>
826 label.when_checked_job_visible_region_and_results = <html>When checked, a single job is created for the visible region and results mapped back onto their location in the alignment. Otherwise, a job would be created for every contiguous region visible in the alignment or current selection (e.g. a multiple alignment).</html>
827 label.flat_file_representation = <html>Flat file representation of this rest service using the Really Simple Bioinformatics Service formalism</html>
828 label.result_of_parsing_rsbs = <html>Results of parsing the RSBS representation</html>
829 label.user_preset = User Preset
830 label.service_preset = Service Preset
831 label.run_with_preset = Run {0} with preset
832 label.view_service_doc_url = <html>View <a href="{0}">{1}</a></html>
833 action.by_title_param = By {0}
834 label.source_from_db_source = Sources from {0}
835 label.from_msname = from {0}
836 label.superpose_with = Superpose with
837 label.scale_label_to_column = Scale Label to Column
838 label.add_new_row = Add New Row
839 label.edit_label_description = Edit Label/Description
840 label.hide_row = Hide This Row
841 label.delete_row = Delete This Row
842 label.show_all_hidden_rows = Show All Hidden Rows
843 label.export_annotation = Export Annotation
844 label.copy_consensus_sequence = Copy Consensus Sequence
847 label.rna_helix = RNA Helix
848 label.remove_annotation = Remove Annotation
849 label.colour_by = Colour by...
850 label.muscle_multiple_protein_sequence_alignment = Muscle Multiple Protein Sequence Alignment
851 label.mafft_multiple_sequence_alignment = MAFFT Multiple Sequence Alignment
852 label.clustalw_multiple_sequence_alignment = ClustalW Multiple Sequence Alignment
853 label.jnet_secondary_structure_prediction = JPred Secondary Structure Prediction
854 label.multiharmony = Multi-Harmony
855 label.unable_start_web_service_analysis = Unable to start web service analysis
856 label.job_couldnt_be_started_check_input = The Job couldn't be started. Please check your input, and the Jalview console for any warning messages.
857 label.prompt_each_time = Prompt each time
858 label.couldnt_save_project = Couldn't save project
859 label.error_whilst_saving_current_state_to = Error whilst saving current state to {0}
860 label.error_whilst_loading_project_from = Error whilst loading project from {0}
861 label.couldnt_load_project = Couldn't load project
862 label.invalid_name_preset_exists = Invalid name - preset already exists.
863 label.invalid_name = Invalid name
864 label.set_proxy_settings = Please set up your proxy settings in the 'Connections' tab of the Preferences window
865 label.proxy_authorization_failed = Proxy Authorization Failed
866 label.internal_jalview_error = Internal Jalview Error
867 label.secondary_structure_prediction_service_couldnt_be_located = The Secondary Structure Prediction Service named {0} at {1} couldn't be located.
868 label.service_called_is_not_msa_service = The Service called \n{0}\nis not a \nMultiple Sequence Alignment Service\!
869 label.msa_service_is_unknown = The Multiple Sequence Alignment Service named {0} is unknown
870 label.service_called_is_not_seq_search_service = The Service called \n{0}\nis not a \nSequence Search Service\!
871 label.seq_search_service_is_unknown = The Sequence Search Service named {0} is unknown
872 label.feature_type = Feature Type
874 label.service_url = Service URL
875 label.copied_sequences = Copied sequences
876 label.cut_sequences = Cut Sequences
877 label.conservation_colour_increment = Conservation Colour Increment ({0})
878 label.percentage_identity_threshold = Percentage Identity Threshold ({0})
879 label.error_unsupported_owwner_user_colour_scheme = Unsupported owner for User Colour scheme dialog
880 label.save_alignment_to_file = Save Alignment to file
881 label.save_features_to_file = Save Features to File
882 label.save_annotation_to_file = Save Annotation to File
883 label.save_pdb_file = Save PDB File
884 label.save_text_to_file = Save Text to File
885 label.save_state = Save State
886 label.restore_state = Restore State
887 label.saving_jalview_project = Saving jalview project {0}
888 label.loading_jalview_project = Loading jalview project {0}
889 label.load_feature_colours = Load Feature Colours
890 label.save_feature_colours = Save Feature Colour Scheme
891 label.select_startup_file = Select startup file
892 label.select_default_browser = Select default web browser
893 label.save_tree_as_newick = Save tree as newick file
894 label.save_colour_scheme = Save colour scheme
895 label.edit_params_for = Edit parameters for {0}
896 label.choose_filename_for_param_file = Choose a filename for this parameter file
897 label.save_as_html = Save as HTML
898 label.recently_opened = Recently Opened
899 label.blasting_for_unidentified_sequence_jobs_running = BLASTing for unidentified sequences - {0} jobs running.
901 label.tree_from = Tree from {0}
902 label.webservice_job_title = {0} using {1}
903 label.select_visible_region_of = selected {0} region of {1}
904 label.visible = Visible
905 label.select_unselect_visible_regions_from = select and unselected {0} regions from {1}
906 label.visible_region_of = visible region of
907 label.webservice_job_title_on = {0} using {1} on {2}
908 label.loading_file = Loading File: {0}
909 label.edit_params = Edit {0}
910 label.as_percentage = As Percentage
911 error.not_implemented = Not implemented
912 error.no_such_method_as_clone1_for = No such method as clone1 for {0}
913 error.null_from_clone1 = Null from clone1!
914 error.not_yet_implemented = Not yet implemented
915 error.unknown_type_dna_or_pep = Unknown Type {0} - dna or pep are the only allowed values.
916 error.implementation_error_dont_know_threshold_annotationcolourgradient = Implementation error: don't know about threshold setting for current AnnotationColourGradient.
917 error.invalid_separator_parameter = Invalid separator parameter - must be non-zero length
918 error.alignment_cigararray_not_implemented = Alignment(CigarArray) not yet implemented
919 error.empty_view_cannot_be_updated = empty view cannot be updated.
920 error.mismatch_between_number_of_sequences_in_block = Mismatch between number of sequences in block {0} ({1}) and the original view ({2})
921 error.padding_not_yet_implemented = Padding not yet implemented
922 error.mismatch_between_visible_blocks_to_update_and_number_of_contigs_in_view = Mismatch between visible blocks to update and number of contigs in view (contigs=0,blocks={0})
923 error.unknown_seq_cigar_operation = Unknown SeqCigar operation {0}
924 error.implementation_bug_parse_cigar_string = Implementation bug in parseCigarString
925 error.implementation_error_invalid_operation_string = Implementation error. Invalid operation string.
926 error.invalid_range_string = Invalid range string (must be zero or positive number)
927 error.implementation_error_delete_range_out_of_bounds = Implementation Error: deleteRange out of bounds: start must be non-negative and less than end.
928 error.implementation_error = Implementation error
929 error.implementation_error_unknown_operation = Implementation Error! Unknown operation {0}
930 error.implementation_error_unexpected_null_from_get_sequence_and_deletions = Implementation Error - unexpected null from getSequenceAndDeletions
931 error.implementation_error_set_seq_null = Implementation Error - _setSeq(null,...)
932 error.implementation_error_s = Implementation Error: _s= {0}
933 error.implementation_error_seqcigar_possible = SeqCigar: Possible implementation error: sequence is longer than dataset sequence
934 error.implmentation_bug_seq_null = Implementation Bug. Null seq
935 error.implementation_bug_cigar_operation_list_range_list = Implementation Bug. Cigar Operation list!= range list
936 error.not_yet_implemented_cigar_object_from_cigar_string = NOT YET Implemented: Constructing a Cigar object from a cigar string and a gapped sequence.
937 error.implementation_bug_cigar_operation = Implementation Bug. Cigar Operation {0} {1} not one of {2}, {3}, or {4}.
938 error.implementation_error_for_new_cigar = Implementation error for new Cigar(SequenceI)
939 error.implementation_error_cigar_seq_no_operations = Implementation error: {0}th sequence Cigar has no operations.
940 error.implementation_error_no_pdbentry_from_index = Implementation error - no corresponding pdbentry (for index {0}) to add sequences mappings to
941 error.jmol_version_not_compatible_with_jalview_version = Jmol version {0} is not compatible with this version of Jalview. Report this problem at issues.jalview.org
942 error.not_implemented_remove = Remove: Not implemented
943 error.not_implemented_clone = Clone: Not implemented
944 error.call_setprogressbar_before_registering_handler = call setProgressBar before registering the progress bar's handler.
945 label.cancelled_params = Cancelled {0}
946 error.implementation_error_cannot_show_view_alignment_frame = Implementation error: cannot show a view from another alignment in an AlignFrame.
947 error.implementation_error_dont_know_about_threshold_setting = Implementation error: don't know about threshold setting for current AnnotationColourGradient.
948 label.groovy_support_failed = Jalview Groovy Support Failed
949 label.couldnt_create_groovy_shell = Couldn't create the groovy Shell. Check the error log for the details of what went wrong.
950 error.unsupported_version_calcIdparam = Unsupported Version for calcIdparam {0}
951 error.implementation_error_cant_reorder_tree = Implementation Error: Can't reorder this tree. Not DefaultMutableTreeNode.
952 error.invalid_value_for_option = Invalid value ''{0}'' for option ''{1}''
953 error.implementation_error_cannot_import_vamsas_doc = Implementation Error - cannot import existing vamsas document into an existing session, Yet!
954 label.vamsas_doc_couldnt_be_opened_as_new_session = VAMSAS Document could not be opened as a new session - please choose another
955 error.setstatus_called_non_existent_job_pane = setStatus called for non-existent job pane {0}
956 error.implementation_error_cannot_find_marshaller_for_param_set =Implementation error: Can't find a marshaller for the parameter set
957 error.implementation_error_old_jalview_object_not_bound =IMPLEMENTATION ERROR: old jalview object is not bound ! ({0})
958 error.implementation_error_vamsas_doc_class_should_bind_to_type = Implementation Error: Vamsas Document Class {0} should bind to a {1} (found a {2})
959 error.invalid_vamsas_rangetype_cannot_resolve_lists = Invalid vamsas RangeType - cannot resolve both lists of Pos and Seg from choice!
960 error.implementation_error_cannot_have_null_alignment = Implementation error: Cannot have null alignment property key
961 error.implementation_error_null_fileparse = Implementation error. Null FileParse in copy constructor
962 error.implementation_error_structure_selection_manager_null = Implementation error. Structure selection manager's context is 'null'
963 exception.ssm_context_is_null = SSM context is null
964 error.idstring_seqstrings_only_one_per_sequence = idstrings and seqstrings contain one string each per sequence
965 error.cannot_have_mixed_length_replacement_vectors = Cannot have mixed length replacement vectors. Replacement vector for {0} is {1} strings long, and have already seen a {2} length vector.
966 error.cannot_have_zero_length_vector_replacement_strings = Cannot have zero length vector of replacement strings - either 1 value or n values.
967 error.implementation_error_multiple_single_sequence_prediction_jobs_not_supported = Implementation Error! Multiple single sequence prediction jobs are not yet supported
968 error.implementation_error_invalid_msa_index_for_job =Implementation Error! Invalid msaIndex for JPredJob on parent MSA input object!
969 error.implementation_error_startjob_called = Implementation error - StartJob(JpredJob) called on {0}
970 error.multiple_jnet_subjob_merge_not_implemented = Multiple JPred subjob merging not yet implemented
971 label.job_never_ran = Job never ran - input returned to user.
972 error.implementation_error_minlen_must_be_greater_zero = Implementation error: minlen must be zero or more
973 error.implementation_error_msawbjob_called = Implementation error - StartJob(MsaWSJob) called on a WSJobInstance {0}
974 error.implementation_error_cannot_attach_ws_menu_entry = IMPLEMENTATION ERROR: cannot attach WS Menu Entry without service handle reference!
975 error.parameter_migration_not_implemented_yet = Parameter migration not implemented yet
976 error.implementation_error_cannot_set_jaba_option = Implementation error: cannot set Jaba Option to a value outside its allowed value range!
977 error.implementation_error_valuetype_doesnt_support_jabaws_type = IMPLEMENTATION ERROR: jalview.ws.params.ValueConstrainI.ValueType does not support the JABAWS type : {0}
978 error.cannot_create_jabaws_param_set = Cannot create a JabaWSParamSet from non-JabaWS parameters
979 error.cannot_set_arguments_to_jabaws_param_set = Cannot set arguments to a JabaWSParamSet that are not JabaWS arguments
980 error.implementation_error_runner_config_not_available = Implementation Error: Runner Config not available for a JABAWS service of type {0} ({1})
981 error.implementation_error_cannot_handle_jaba_param = Implementation Error: Cannot handle Jaba parameter object {0}
982 error.implementation_error_attempt_to_delete_service_preset = Implementation error: Attempt to delete a service preset!
983 error.implementation_error_cannot_locate_oldname_presetname = Implementation error: Can't locate either oldname ({0}) or presetName ({1}in the datastore!"
984 error.implementation_error_jabaws_param_set_only_handled_by = Implementation error: JabaWsParamSets can only be handled by JabaParamStore
985 error.cannot_set_source_file_for = Cannot set source file for {0}
986 error.mismatch_service_instance_preset = Probable mismatch between service instance and preset!
987 error.cannot_set_params_for_ws_preset = Cannot set Parameters for a Jaba Web service's preset
988 error.implementation_error_can_only_instantiate_jaba_param_sets = Implementation error: Can only instantiate Jaba parameter sets
989 error.no_aacon_service_found = No AACon service found
990 error.implementation_error_couldnt_copy_value_constraint = Implementation error: could not copy ValueConstrain!
991 error.couldnt_encode_as_utf8 = Couldn't encode {0} as UTF-8.
992 error.tree_inputtype_not_yet_implemented = Tree InputType not yet implemented
993 error.implementation_error_need_to_have_httpresponse = Implementation Error: need to have an HttpResponse to process
994 error.dbrefsource_implementation_exception =DBRefSource Implementation Exception
995 error.implementation_error_dbinstance_must_implement_interface = Implmentation Error - getDbInstances must be given a class that implements jalview.ws.seqfetcher.DbSourceProxy (was given{0})
996 error.implementation_error_must_init_dbsources =Implementation error. Must initialise dbSources
997 label.view_controller_toggled_marked = {0} {1} columns {2} features of type {3} across {4} sequence(s)
998 label.no_highlighted_regions_marked = No highlighted regions marked
999 label.toggled = Toggled
1000 label.marked = Marked
1001 label.containing = containing
1002 label.not_containing = not containing
1003 label.no_feature_of_type_found = No features of type {0} found
1004 label.no_feature_found_selection = No features of type {0} found in selection
1005 label.submission_params = Submission {0}
1006 label.empty_alignment_job = Empty Alignment Job
1007 label.add_new_sbrs_service = Add a new Simple Bioinformatics Rest Service
1008 label.edit_sbrs_entry = Edit Simple Bioinformatics Rest Service entry
1009 label.pca_recalculating = Recalculating PCA
1010 label.pca_calculating = Calculating PCA
1011 label.select_foreground_colour = Choose foreground colour
1012 label.select_colour_for_text = Select Colour for Text
1013 label.adjust_foreground_text_colour_threshold = Adjust Foreground Text Colour Threshold
1014 label.select_subtree_colour = Select Sub-Tree Colour
1015 label.create_new_sequence_features = Create New Sequence Feature(s)
1016 label.amend_delete_features = Amend/Delete Features for {0}
1017 exception.out_of_bounds_for_file = Out of bounds for file: i={0}, Final Buffer: i0={1} iend={2}
1018 exception.null_string_given_to_regex_search = Null String Given to Regex.search
1019 exception.null_string_like_given_to_regex_search = Null StringLike Given to Regex.search
1020 exception.null_string_given_to_regex_reverse_search = Null String Given to Regex.reverseSearch
1021 exception.null_string_like_given_to_regex_reverse_search = Null StringLike Given to Regex.reverseSearch
1022 exception.null_string_like_given_to_regex_search_from = Null String Given to Regex.searchFrom
1023 exception.null_string_like_given_to_regex_search_region = Null String Given to Regex.searchRegion
1024 exception.replace_null_regex_pointer = Replacer has null Regex pointer
1025 exception.bad_pattern_to_regex_perl_code = bad pattern to Regex.perlCode: {0}
1026 exception.no_stub_implementation_for_interface = There is no stub implementation for the interface: {0}
1027 exception.cannot_set_endpoint_address_unknown_port = Cannot set Endpoint Address for Unknown Port {0}
1028 exception.mismatched_unseen_closing_char = Mismatched (unseen) closing character {0}
1029 exception.mismatched_closing_char = Mismatched closing character {0}
1030 exception.mismatched_opening_char = Mismatched opening character {0} at {1}
1031 exception.invalid_datasource_couldnt_obtain_reader = Invalid datasource. Could not obtain Reader
1032 exception.unterminated_cigar_string = Unterminated cigar string
1033 exception.unexpected_operation_cigar_string_pos = Unexpected operation {0} in cigar string (position {1} in {2}
1034 exception.couldnt_parse_responde_from_annotated3d_server = Couldn't parse response from Annotate3d server
1035 exception.application_test_npe = Application test: throwing an NullPointerException It should arrive at the console
1036 exception.overwriting_vamsas_id_binding = Overwriting vamsas id binding
1037 exception.overwriting_jalview_id_binding = Overwriting jalview id binding
1038 exception.failed_to_resolve_gzip_stream = Failed to resolve GZIP stream
1039 exception.problem_opening_file_also_tried = Problem opening {0} (also tried {1}) : {2}
1040 exception.problem_opening_file = Problem opening {0} : {1}
1041 exception.failed_to_read_data_from_source = Failed to read data from source: {0}
1042 exception.no_init_source_stream = Unitialised Source Stream
1043 exception.invalid_source_stream = Invalid Source Stream: {0}
1044 error.implementation_error_reset_called_for_invalid_source = Implementation Error: Reset called for invalid source.
1045 exception.number_of_residues_in_query_sequence_differ_from_prediction = Number of residues in {0} supposed query sequence ({1}\n{2})\ndiffer from number of prediction sites in prediction ({3})
1046 label.mapped = mapped
1047 exception.jpredconcide_entry_has_unexpected_number_of_columns = JPredConcise: Entry ({0}) has an unexpected number of columns
1048 exception.couldnt_parse_concise_annotation_for_prediction = Couldn't parse concise annotation for prediction profile.\n{0}
1049 exception.newfile = NewickFile\: {0}\n
1050 label.no_tree_read_in = No Tree read in
1051 exception.rnaml_couldnt_access_datasource = Couldn't access datasource ({0})
1052 exception.ranml_couldnt_process_data = Couldn't process data as RNAML file ({0})
1053 exception.ranml_invalid_file = Invalid RNAML file ({0})
1054 exception.ranml_problem_parsing_data = Problem parsing data as RNAML ({0})
1055 exception.pfam_no_sequences_found = No sequences found (PFAM input)
1056 exception.hmmer_no_valid_sequences_found = No valid sequences found
1057 exception.stockholm_invalid_format = This file is not in valid STOCKHOLM format: First line does not contain '# STOCKHOLM'
1058 exception.couldnt_parse_sequence_line = Could not parse sequence line: {0}
1059 exception.unknown_annotation_detected = Unknown annotation detected: {0} {1}
1060 exception.couldnt_store_sequence_mappings = Couldn't store sequence mappings for {0}
1061 exception.matrix_too_many_iteration = Too many iterations in {0} (max is {1})
1062 exception.browser_not_found = Exception in finding browser: {0}
1063 exception.browser_unable_to_locate = Unable to locate browser: {0}
1064 exception.invocation_target_exception_creating_aedesc = InvocationTargetException while creating AEDesc: {0}
1065 exception.illegal_access_building_apple_evt= IllegalAccessException while building AppleEvent: {0}
1066 exception.unable_to_launch_url = Unable to launch URL: {0}
1067 exception.unable_to_create_internet_config = Unable to create an Internet Config instance: {0}
1068 exception.invocation_target_calling_url = InvocationTargetException while calling openURL: {0}
1069 exception.illegal_access_calling_url = IllegalAccessException while calling openURL: {0}
1070 exception.interrupted_launching_browser = InterruptedException while launching browser: {0}
1071 exception.ebiembl_retrieval_failed_on = EBI EMBL XML retrieval failed on {0}:{1}
1072 exception.no_pdb_records_for_chain = No PDB Records for {0} chain {1}
1073 exception.unexpected_handling_rnaml_translation_for_pdb = Unexpected exception when handling RNAML translation of PDB data
1074 exception.couldnt_recover_sequence_properties_for_alignment = Couldn't recover sequence properties for alignment
1075 exception.unknown_format_for_file = Unknown format {0} for file \: \n{1}
1076 label.remove_gaps = Remove Gaps
1077 exception.couldnt_recover_sequence_props_for_jnet_query = Couldn't recover sequence properties for JPred Query sequence!
1078 exception.server_timeout_try_later = Server timed out - try again later\n
1079 exception.web_service_returned_null_try_later= Server at {0} returned null object, it probably cannot be contacted. Try again later.
1080 exception.cannot_contact_service_endpoint_at = Cannot contact service endpoint at {0}
1081 error.implementation_error_cannot_find_service_url_in_given_set = Implementation error: Cannot find service url in the given url set!
1082 error.implementation_error_cannot_find_service_url_in_given_set_param_store = Implementation error: Cannot find service url in the given url set for this service parameter store ({0}}
1083 exception.jobsubmission_invalid_params_set = Invalid parameter set. Check Jalview implementation
1084 exception.notvaliddata_group_contains_less_than_min_seqs = Group contains less than {0} sequences.
1085 exception.outofmemory_loading_pdb_file = Out of memory loading PDB File
1086 exception.eps_method_not_supported = Method not currently supported by EpsGraphics2D version {0}
1087 exception.eps_unable_to_get_inverse_matrix = Unable to get inverse of matrix: {0}
1088 warn.job_cannot_be_cancelled_close_window = This job cannot be cancelled.\nJust close the window.
1089 warn.service_not_supported = Service not supported!
1090 warn.input_is_too_big = Input is too big!
1091 warn.invalid_job_param_set = Invalid job parameter set!
1092 warn.oneseq_msainput_selection = The current selection only contains a single sequence. Do you want to submit all sequences for alignment instead ?
1093 info.job_couldnt_be_run_server_doesnt_support_program = Job could not be run because the server doesn't support this program.\n{0}
1094 info.job_couldnt_be_run_exceeded_hard_limit = Job could not be run because it exceeded a hard limit on the server.\n{0}
1095 info.job_couldnt_be_run_incorrect_param_setting = Job could not be run because some of the parameter settings are not supported by the server.\n{0}\nPlease check to make sure you have used the correct parameter set for this service\!\n
1096 info.no_jobs_ran = No jobs ran
1097 info.failed_to_submit_prediction = Failed to submit the prediction\:\n{0} {1}
1098 info.invalid_jnet_job_result_data ={0}\n{1}\nInvalid JPred job result data\!\n{2}
1099 info.failed_to_submit_sequences_for_alignment = Failed to submit sequences for alignment.\nIt is most likely that there is a problem with the server.\nJust close the window\n
1100 info.alignment_object_method_notes = \nAlignment Object Method Notes\n
1101 info.server_exception = \n{0} Server exception\!\n{1}
1102 info.invalid_msa_input_mininfo = Need at least two sequences with at least 3 residues each, with no hidden regions between them.
1103 info.invalid_msa_notenough = Not enough sequence data to align
1104 status.processing_commandline_args = Processing commandline arguments...
1105 status.das_features_being_retrived = DAS features being retrieved...
1106 status.searching_for_sequences_from = Searching for sequences from {0}
1107 status.finished_searching_for_sequences_from = Finished searching for sequences from {0}
1108 label.eps_file = EPS file
1109 label.png_image = PNG image
1110 status.export_complete = {0} Export completed
1111 status.fetching_pdb = Fetching PDB {0}
1112 status.refreshing_news = Refreshing news
1113 status.opening_params = Opening {0}
1114 status.waiting_sequence_database_fetchers_init = Waiting for Sequence Database Fetchers to initialise
1115 status.init_sequence_database_fetchers = Initialising Sequence Database Fetchers
1116 status.fetching_sequence_queries_from = Fetching {0} sequence queries from {1}
1117 status.finshed_querying = Finished querying
1118 status.parsing_results = Parsing results.
1119 status.processing = Processing...
1120 status.refreshing_web_service_menus = Refreshing Web Service Menus
1121 status.collecting_job_results = Collecting job results.
1122 status.fetching_db_refs = Fetching db refs
1123 status.loading_cached_pdb_entries = Loading Cached PDB Entries
1124 status.searching_for_pdb_structures = Searching for PDB Structures
1125 status.searching_3d_beacons = Searching 3D Beacons
1126 status.no_structures_discovered_from_3d_beacons = No models discovered from 3D Beacons
1127 status.opening_file_for = opening file for
1128 status.running_hmmbuild = Building Hidden Markov Model
1129 status.running_hmmalign = Creating alignment with Hidden Markov Model
1130 status.running_search = Searching for matching sequences
1131 status.colouring_structures = Colouring structures
1132 label.font_doesnt_have_letters_defined = Font doesn't have letters defined\nso cannot be used\nwith alignment data
1133 label.font_too_small = Font size is too small
1134 label.error_loading_file_params = Error loading file {0}
1135 label.error_loading_jalview_file = Error loading Jalview file
1136 warn.out_of_memory_when_action = Out of memory when {0}\!\!\nSee help files for increasing Java Virtual Machine memory.
1137 warn.out_of_memory_loading_file = Out of memory loading file {0}\!\!\nSee help files for increasing Java Virtual Machine memory.
1138 label.out_of_memory = Out of memory
1139 label.invalid_id_column_width = Invalid ID Column width
1140 warn.user_defined_width_requirements = The user defined width for the\nannotation and sequence ID columns\nin exported figures must be\nat least 12 pixels wide.
1141 label.couldnt_create_sequence_fetcher = Couldn't create SequenceFetcher
1142 warn.couldnt_create_sequence_fetcher_client = Could not create the sequence fetcher client. Check error logs for details.
1143 warn.server_didnt_pass_validation = Service did not pass validation.\nCheck the Jalview Console for more details.
1144 warn.url_must_contain = Sequence URL must contain $SEQUENCE_ID$, $DB_ACCESSION$, or a regex
1145 warn.urls_not_contacted = URLs that could not be contacted
1146 warn.urls_no_jaba = URLs without any JABA Services
1147 info.validate_jabaws_server = Validate JabaWS Server ?\n(Look in console output for results)
1148 label.test_server = Test Server?
1149 label.new_sequence_fetcher = New Sequence Fetcher
1150 label.additional_sequence_fetcher = Additional Sequence Fetcher
1151 label.select_database_retrieval_source = Select Database Retrieval Source
1152 label.overwrite_existing_file = Overwrite existing file?
1153 label.file_already_exists = File exists
1154 label.edit_jabaws_url = Edit JABAWS URL
1155 label.add_jabaws_url = Add new JABAWS URL
1156 label.news_from_jalview = News from http://www.jalview.org
1157 label.cut_paste_alignmen_file = Cut & Paste Alignment File
1158 label.enter_redundancy_threshold = Enter the redundancy threshold
1159 label.select_dark_light_set_threshold = <html><i>Select a dark and light text colour, then set the threshold to<br>switch between colours, based on background colour</i></html>
1160 label.select_feature_colour = Select Feature Colour
1161 label.delete_all = Delete all sequences
1162 warn.delete_all = <html>Deleting all sequences will close the alignment window.<br>Confirm deletion or Cancel.
1163 label.add_annotations_for = Add annotations for
1164 action.choose_annotations = Choose Annotations...
1165 label.choose_annotations = Choose Annotations
1168 label.invalid_search = Search string invalid
1169 error.invalid_regex = Invalid regular expression
1170 label.ignore_gaps_consensus = Ignore Gaps In Consensus
1171 label.show_group_histogram = Show Group Histogram
1172 label.show_group_logo = Show Group Logo
1173 label.normalise_group_logo = Normalise Group Logo
1174 label.show_histogram = Show Histogram
1175 label.show_logo = Show Logo
1176 label.normalise_logo = Normalise Logo
1177 label.no_colour_selection_in_scheme = Please make a colour selection before applying colour scheme
1178 label.no_colour_selection_warn = Error saving colour scheme
1179 label.open_split_window? = Would you like to open as a split window, with cDNA and protein linked?
1180 label.open_split_window = Open split window
1184 label.select_by_annotation = Select/Hide Columns by Annotation
1185 action.select_by_annotation = Select/Hide Columns by Annotation...
1186 label.threshold_filter = Threshold Filter
1187 label.alpha_helix = Alpha Helix
1188 label.beta_strand = Beta Strand
1190 label.select_all = Select All
1191 label.structures_filter = Structures Filter
1192 label.search_filter = Search Filter
1193 label.include_description= Include Description
1195 label.hide_insertions = Hide Insertions
1196 label.mark_as_representative = Mark as representative
1197 label.open_jabaws_web_page = Open JABAWS web page
1198 label.pdb_sequence_fetcher = PDB Sequence Fetcher
1199 label.result = result
1200 label.results = results
1201 label.structure_chooser = Structure Chooser
1202 label.invert = Invert
1203 label.select_pdb_file = Select PDB File
1204 info.select_filter_option = Select Filter Option/Manual Entry
1205 info.associate_wit_sequence = Associate with Sequence
1206 label.search_result = Search Result
1207 label.found_structures_summary = Found Structures Summary
1208 label.configure_displayed_columns = Customise Displayed Options
1209 label.start_jalview = Start Jalview
1210 label.biojs_html_export = BioJS
1211 label.scale_as_cdna = Scale protein residues to codons
1212 label.font_as_cdna = Use same font for cDNA and peptide
1213 label.scale_protein_to_cdna = Scale Protein to cDNA
1214 label.scale_protein_to_cdna_tip = Make protein residues same width as codons in split frame views
1215 info.select_annotation_row = Select Annotation Row
1216 info.enter_search_text_here = Enter Search Text Here
1217 info.enter_search_text_to_enable = Enter Search Text to Enable
1218 info.search_in_annotation_label = Search in {0} Label
1219 info.search_in_annotation_description = Search in {0} Description
1220 info.change_threshold_mode_to_enable = Change Threshold Mode to Enable
1221 label.couldnt_read_data = Couldn't read data
1222 label.embbed_biojson = Embed BioJSON to HTML export
1223 action.export_groups = Export Groups
1224 action.export_annotations = Export Annotations
1225 action.export_hidden_columns = Export Hidden Columns
1226 action.export_hidden_sequences = Export Hidden Sequences
1227 action.export_features = Export Features
1228 label.export_settings = Export Settings
1229 label.pdb_web-service_error = PDB Web-service Error
1230 label.structure_chooser_manual_association = Structure Chooser - Manual association
1231 label.structure_chooser_filter_time = Structure Chooser - Filter time ({0})
1232 label.structure_chooser_no_of_structures = Structure Chooser - {0} Found ({1})
1233 info.no_pdb_entry_found_for = No PDB entry found for {0}
1234 exception.unable_to_detect_internet_connection = Jalview is unable to detect an internet connection
1235 exception.fts_server_unreachable = Jalview is unable to reach the {0} server. \nPlease ensure that you are connected to the internet and try again.
1236 label.nw_mapping = Needleman & Wunsch Alignment
1237 label.sifts_mapping = SIFTs Mapping
1238 label.mapping_method = Sequence \u27f7 Structure mapping method
1239 status.cancelled_image_export_operation = Cancelled {0} export operation
1240 info.error_creating_file = Error creating {0} file
1241 exception.outofmemory_loading_mmcif_file = Out of memory loading mmCIF File
1242 label.run_groovy = Run Groovy console script
1243 label.run_groovy_tip = Run the script in the Groovy console over this alignment
1244 label.couldnt_run_groovy_script = Failed to run Groovy script
1245 label.uniprot_sequence_fetcher = UniProt Sequence Fetcher
1246 action.next_page= >>
1247 action.prev_page= <<
1248 label.next_page_tooltip=Next Page
1249 label.prev_page_tooltip=Previous Page
1250 status.launching_3d_structure_viewer = Launching 3D Structure viewer...
1251 status.fetching_3d_structures_for_selected_entries = Fetching 3D Structures for selected entries...
1252 status.fetching_dbrefs_for_sequences_without_valid_refs = Fetching db refs for {0} sequence(s) without valid db ref required for SIFTS mapping
1253 status.fetching_3d_structures_for = Fetching 3D Structure for {0}
1254 status.obtaining_mapping_with_sifts = Obtaining mapping with SIFTS
1255 status.obtaining_mapping_with_nw_alignment = Obtaining mapping with NW alignment
1256 status.exporting_alignment_as_x_file = Exporting alignment as {0} file
1257 label.column = Column
1258 label.cant_map_cds = Unable to map CDS to protein\nCDS missing or incomplete
1259 label.operation_failed = Operation failed
1260 label.SEQUENCE_ID_no_longer_used = $SEQUENCE_ID$ is no longer used for DB accessions
1261 label.SEQUENCE_ID_for_DB_ACCESSION1 = Please review your URL links in the 'Connections' tab of the Preferences window:
1262 label.SEQUENCE_ID_for_DB_ACCESSION2 = URL links using '$SEQUENCE_ID$' for DB accessions now use '$DB_ACCESSION$'.
1263 label.do_not_display_again = Do not display this message again
1264 exception.url_cannot_have_duplicate_id = {0} cannot be used as a label for more than one line
1265 action.customfilter = Custom only
1266 action.showall = Show All
1267 label.insert = Insert:
1268 action.seq_id = $SEQUENCE_ID$
1269 action.db_acc = $DB_ACCESSION$
1270 label.primary = Double Click
1271 label.inmenu = In Menu
1273 label.database = Database
1274 label.urltooltip = Only one url, which must use a sequence id, can be selected for the 'On Click' option
1275 label.edit_sequence_url_link = Edit sequence URL link
1276 warn.name_cannot_be_duplicate = User-defined URL names must be unique and cannot be MIRIAM ids
1277 label.output_seq_details = Output Sequence Details to list all database references
1278 label.urllinks = Links
1279 action.clear_cached_items = Clear Cached Items
1280 label.togglehidden = Show hidden regions
1281 label.quality_descr = Alignment Quality based on Blosum62 scores
1282 label.conservation_descr = Conservation of total alignment less than {0}% gaps
1283 label.consensus_descr = PID
1284 label.complement_consensus_descr = PID for cDNA
1285 label.strucconsensus_descr = PID for base pairs
1286 label.occupancy_descr = Number of aligned positions
1287 label.show_experimental = Enable experimental features
1288 label.show_experimental_tip = Enable any new and currently 'experimental' features (see Latest Release Notes for details)
1289 label.warning_hidden = Warning: {0} {1} is currently hidden
1290 label.overview_settings = Overview settings
1291 label.ov_legacy_gap = Use legacy gap colouring (gaps are white)
1292 label.gap_colour = Gap colour:
1293 label.ov_show_hide_default = Show hidden regions when opening overview
1294 label.hidden_colour = Hidden colour:
1295 label.select_gap_colour = Select gap colour
1296 label.select_hidden_colour = Select hidden colour
1297 label.overview = Overview
1298 label.reset_to_defaults = Reset to defaults
1299 label.oview_calc = Recalculating overview...
1300 label.feature_details = Feature details
1301 label.matchCondition_contains = Contains
1302 label.matchCondition_notcontains = Does not contain
1303 label.matchCondition_matches = Matches
1304 label.matchCondition_notmatches = Does not match
1305 label.matchCondition_present = Is present
1306 label.matchCondition_notpresent = Is not present
1307 label.matchCondition_eq = =
1308 label.matchCondition_ne = not =
1309 label.matchCondition_lt = <
1310 label.matchCondition_le = <=
1311 label.matchCondition_gt = >
1312 label.matchCondition_ge = >=
1313 label.numeric_required = The value should be numeric
1314 label.filter = Filter
1315 label.filters = Filters
1316 label.join_conditions = Join conditions with
1317 label.delete_condition = Delete this condition
1319 label.colour_by_label = Colour by label
1320 label.variable_colour = Variable colour...
1321 label.select_colour_for = Select colour for {0}
1322 option.enable_disable_autosearch = When ticked, search is performed automatically
1323 option.autosearch = Autosearch
1324 label.retrieve_ids = Retrieve IDs
1325 label.display_settings_for = Display settings for {0} features
1326 label.simple = Simple
1327 label.simple_colour = Simple Colour
1328 label.colour_by_text = Colour by text
1329 label.graduated_colour = Graduated Colour
1330 label.by_text_of = By text of
1331 label.by_range_of = By range of
1334 label.sequence_feature_colours = Sequence Feature Colours
1335 label.best_quality = Best Quality
1336 label.best_resolution = Best Resolution
1337 label.most_protein_chain = Most Protein Chain
1338 label.most_bound_molecules = Most Bound Molecules
1339 label.most_polymer_residues = Most Polymer Residues
1340 label.cached_structures = Cached Structures
1341 label.free_text_search = Free Text Search
1342 label.annotation_name = Annotation Name
1343 label.annotation_description = Annotation Description
1344 label.edit_annotation_name_description = Edit Annotation Name/Description
1345 label.alignment = alignment
1347 label.create_image_of = Create {0} image of {1}
1348 label.click_to_edit = Click to edit, right-click for menu
1349 label.hmmalign = hmmalign
1350 label.use_hmm = HMM profile to use
1351 label.use_sequence = Sequence to use
1352 label.hmmbuild = hmmbuild
1353 label.hmmsearch = hmmsearch
1354 label.jackhmmer = jackhmmer
1355 label.installation = Installation
1356 label.hmmer_location = HMMER Binaries Installation Location
1357 label.cygwin_location = Cygwin Binaries Installation Location (Windows)
1358 label.information_annotation = Information Annotation
1359 label.ignore_below_background_frequency = Ignore Below Background Frequency
1360 label.information_description = Information content, measured in bits
1361 warn.no_hmm = No Hidden Markov model found.\nRun hmmbuild or load an HMM file first.
1362 label.no_sequences_found = No matching sequences, or an error occurred.
1364 label.trim_termini = Trim Non-Matching Termini
1365 label.trim_termini_desc = If true, non-matching regions on either end of the resulting alignment are removed.
1366 label.no_of_sequences = Number of sequences returned
1367 label.reporting_cutoff = Reporting Cut-off
1368 label.inclusion_threshold = Inlcusion Threshold
1369 label.freq_alignment = Use alignment background frequencies
1370 label.freq_uniprot = Use Uniprot background frequencies
1371 label.hmmalign_options = hmmalign options
1372 label.hmmsearch_options = hmmsearch options
1373 label.jackhmmer_options = jackhmmer options
1374 label.executable_not_found = The ''{0}'' executable file was not found
1375 warn.command_failed = {0} failed
1376 label.invalid_folder = Invalid Folder
1377 label.number_of_results = Number of Results to Return
1378 label.number_of_iterations = Number of jackhmmer Iterations
1379 label.auto_align_seqs = Automatically Align Fetched Sequences
1380 label.new_returned = new sequences returned
1381 label.use_accessions = Return Accessions
1382 label.check_for_new_sequences = Return Number of New Sequences
1383 label.evalue = E-Value
1384 label.reporting_seq_evalue = Reporting Sequence E-value Cut-off
1385 label.reporting_seq_score = Reporting Sequence Score Threshold
1386 label.reporting_dom_evalue = Reporting Domain E-value Cut-off
1387 label.reporting_dom_score = Reporting Domain Score Threshold
1388 label.inclusion_seq_evalue = Inclusion Sequence E-value Cut-off
1389 label.inclusion_seq_score = Inclusion Sequence Score Threshold
1390 label.inclusion_dom_evalue = Inclusion Domain E-value Cut-off
1391 label.inclusion_dom_score = Inclusion Domain Score Threshold
1392 label.number_of_results_desc = The maximum number of hmmsearch results to display
1393 label.number_of_iterations_desc = The number of iterations jackhmmer will complete when searching for new sequences
1394 label.auto_align_seqs_desc = If true, all fetched sequences will be aligned to the hidden Markov model with which the search was performed
1395 label.check_for_new_sequences_desc = Display number of new sequences returned from hmmsearch compared to the previous alignment
1396 label.use_accessions_desc = If true, the accession number of each sequence is returned, rather than that sequence's name
1397 label.reporting_seq_e_value_desc = The E-value cutoff for returned sequences
1398 label.reporting_seq_score_desc = The score threshold for returned sequences
1399 label.reporting_dom_e_value_desc = The E-value cutoff for returned domains
1400 label.reporting_dom_score_desc = The score threshold for returned domains
1401 label.inclusion_seq_e_value_desc = Sequences with an E-value less than this cut-off are classed as significant
1402 label.inclusion_seq_score_desc = Sequences with a bit score greater than this threshold are classed as significant
1403 label.inclusion_dom_e_value_desc = Domains with an E-value less than this cut-off are classed as significant
1404 label.inclusion_dom_score_desc = Domains with a bit score greater than this threshold are classed as significant
1405 label.add_database = Add Database
1406 label.this_alignment = This alignment
1407 warn.invalid_format = This is not a valid database file format. The current supported formats are Fasta, Stockholm and Pfam.
1408 label.database_for_hmmsearch = The database hmmsearch will search through
1409 label.use_reference = Use Reference Annotation
1410 label.use_reference_desc = If true, hmmbuild will keep all columns defined as a reference position by the reference annotation
1411 label.hmm_name = Alignment HMM Name
1412 label.hmm_name_desc = The name given to the HMM for the alignment
1413 warn.no_reference_annotation = No reference annotation found
1414 label.hmmbuild_for = Build HMM for
1415 label.hmmbuild_for_desc = Build an HMM for the selected sets of sequences
1416 label.alignment = Alignment
1417 label.groups_and_alignment = All groups and alignment
1418 label.groups = All groups
1419 label.selected_group = Selected group
1420 label.use_info_for_height = Use Information Content as Letter Height
1421 action.search = Search
1422 label.backupfiles_confirm_delete = Confirm delete
1423 label.backupfiles_confirm_delete_old_files = Delete the following older backup files? (see the Backups tab in Preferences for more options)
1424 label.backupfiles_confirm_save_file = Confirm save file
1425 label.backupfiles_confirm_save_file_backupfiles_roll_wrong = Something possibly went wrong with the backups of this file.
1426 label.backupfiles_confirm_save_new_saved_file_ok = The new saved file seems okay.
1427 label.backupfiles_confirm_save_new_saved_file_not_ok = The new saved file might not be okay.
1428 label.continue_operation = Continue operation?
1429 label.backups = Backups
1430 label.backup = Backup
1431 label.backup_files = Backup Files
1432 label.enable_backupfiles = Enable backup files
1433 label.backup_filename_strategy = Backup filename strategy
1434 label.append_to_filename = Append to filename (%n is replaced by the backup number)
1435 label.append_to_filename_tooltip = %n in the text will be replaced by the backup number. The text will appear after the filename. See the summary box above.
1436 label.index_digits = Number of digits to use for the backup number (%n)
1437 label.summary_of_backups_scheme = Summary of backup scheme
1438 label.scheme_examples = Scheme examples
1439 label.increment_index = Increase appended text numbers - newest file has largest number.
1440 label.reverse_roll = "Roll" appended text numbers - newest backup file is always number 1.
1441 label.keep_files = Deleting old backup files
1442 label.keep_all_backup_files = Do not delete old backup files
1443 label.keep_only_this_number_of_backup_files = Keep only this number of most recent backup files
1444 label.autodelete_old_backup_files = Auto-delete old backup files:
1445 label.always_ask = Always ask
1446 label.auto_delete = Automatically delete
1447 label.filename = filename
1448 label.braced_oldest = (oldest)
1449 label.braced_newest = (most recent)
1450 label.configuration = Configuration
1451 label.configure_feature_tooltip = Click to configure variable colour or filters
1452 label.schemes = Schemes
1453 label.customise = Customise
1454 label.custom = Custom
1455 label.default = Default
1456 label.single_file = Single backup
1457 label.keep_all_versions = Keep all versions
1458 label.rolled_backups = Rolled backup files
1459 label.customise_description = Select Customise, make changes, and click on OK to save your own custom scheme
1460 label.custom_description = Your own saved scheme
1461 label.default_description = Keep the last three versions of the file
1462 label.single_file_description = Keep the last version of the file
1463 label.keep_all_versions_description = Keep all previous versions of the file
1464 label.rolled_backups_description = Keep the last nine versions of the file from _bak.1 (newest) to _bak.9 (oldest)
1465 label.cancel_changes_description = Cancel changes made to your last saved Custom scheme
1466 label.previously_saved_scheme = Previously saved scheme
1467 label.no_backup_files = NO BACKUP FILES
1468 label.include_backup_files = Include backup files
1469 label.cancel_changes = Cancel changes
1470 label.warning_confirm_change_reverse = Warning!\nIf you change the increment/decrement of the backup filename number, without changing the suffix or number of digits,\nthis may cause loss of backup files created with the previous backup filename scheme.\nAre you sure you wish to do this?
1471 label.change_increment_decrement = Change increment/decrement?
1472 label.was_previous = was {0}
1473 label.newerdelete_replacement_line = Backup file\n''{0}''\t(modified {2}, size {4})\nis to be deleted and replaced by apparently older file\n''{1}''\t(modified {3}, size {5}).
1474 label.confirm_deletion_or_rename = Confirm deletion of ''{0}'' or rename to ''{1}''?
1475 label.newerdelete_line = Backup file\n''{0}''\t(modified {2}, size {4})\nis to be deleted but is newer than the oldest remaining backup file\n''{1}''\t(modified {3}, size {5}).
1476 label.confirm_deletion = Confirm deletion of ''{0}''?
1477 label.delete = Delete
1478 label.rename = Rename
1480 label.file_info = (modified {0}, size {1})
1481 label.annotation_name = Annotation Name
1482 label.annotation_description = Annotation Description
1483 label.edit_annotation_name_description = Edit Annotation Name/Description
1484 label.alignment = alignment
1486 label.create_image_of = Create {0} image of {1}
1487 label.click_to_edit = Click to edit, right-click for menu
1488 label.by_annotation_tooltip = Annotation Colour is configured from the main Colour menu
1489 label.show_linked_features = Show {0} features
1490 label.on_top = on top
1491 label.include_linked_features = Include {0} features
1492 label.include_linked_tooltip = Include visible {0} features<br>converted to local sequence coordinates
1493 label.features_not_shown = {0} feature(s) not shown
1494 label.no_features_to_sort_by = No features to sort by
1495 label.ignore_hidden = Ignore hidden columns
1496 label.ignore_hidden_tooltip = Ignore any characters in hidden columns when matching
1497 label.log_level = Log level
1498 label.log_level_tooltip = Temporarily set the log level for this console. The log level will revert to {0} when this Java console is closed.
1499 label.copy_to_clipboard = Copy to clipboard
1500 label.copy_to_clipboard_tooltip = Copy all of the log text in this console to the system clipboard