1 ScoreMatrix SECONDARYSTRUCTURE
3 # The SECONDARY STRUCTURE substitution matrix, as in <paper name>
4 # The first line declares a ScoreMatrix with the name SECONDARYSTRUCTURE (shown in menus)
6 # Scores are not symbol case sensitive, unless column(s) are provided for lower case characters
7 # The 'guide symbol' at the start of each row of score values is optional
8 # Values may be integer or floating point, delimited by tab, space, comma or combinations