3 <class name="jalview.datamodel.UniprotFile">
4 <map-to xml="uniprot"/>
5 <field name="UniprotEntries" type="jalview.datamodel.UniprotEntry" collection="vector">
6 <bind-xml name="entry"/>
10 <class name="jalview.datamodel.UniprotEntry">
11 <field name="name" type="string" collection="vector"/>
12 <field name="accession" type="string" collection="vector"/>
13 <field name="protein" type="jalview.datamodel.UniprotProteinName"/>
14 <field name="UniprotSequence" type="jalview.datamodel.UniprotSequence">
15 <bind-xml name="sequence"/>
17 <field name="feature" type="jalview.datamodel.SequenceFeature" collection="vector"/>
18 <field name="dbReference" type="jalview.datamodel.PDBEntry" collection="vector"/>
21 <class name="jalview.datamodel.UniprotProteinName">
22 <field name="name" collection="vector" type="string">
23 <bind-xml name="fullName" location="recommendedName" node="element"/>
26 <!-- uniprot protein name is now a collection of collections - the INCLUDES and CONTAINS entries of the uniprot
27 record. This means this doesn't exist anymore...
28 <class name="jalview.datamodel.UniprotProteinName">
29 <field name="name" type="string" collection="vector">
30 <bind-xml name="name"/>
35 <class name="jalview.datamodel.SequenceFeature">
37 <bind-xml node="attribute"/>
39 <field name="description">
40 <bind-xml node="attribute"/>
43 <bind-xml node="attribute"/>
45 <field name="position">
46 <bind-xml name="position" node="attribute" location="location/position"/>
49 <bind-xml name="position" node="attribute" location="location/begin"/>
52 <bind-xml name="position" node="attribute" location="location/end"/>
56 <class name="jalview.datamodel.UniprotSequence">
57 <field name="content" type="string">
58 <bind-xml name="sequence" node="text"/>
62 <class name="jalview.datamodel.PDBEntry">
63 <field name="type"><bind-xml node="attribute"/></field>
64 <field name="id"><bind-xml node="attribute"/></field>
65 <field name="property" collection="hashtable">
66 <bind-xml name="property">
67 <class name="org.exolab.castor.mapping.MapItem">
69 <bind-xml name="type" node="attribute"/>
72 <bind-xml node="attribute"/>