resources/uniprot_mapping.xml

   1 <?xml version="1.0"?>\r
   2 <mapping>\r
   3         <class name="jalview.datamodel.UniprotFile">\r
   4                  <map-to xml="uniprot"/>               \r
   5                  <field name="UniprotEntries" type="jalview.datamodel.UniprotEntry"  collection="vector">\r
   6                       <bind-xml name="entry"/>\r
   7                  </field>               \r
   8         </class>\r
   9                  \r
  10          <class name="jalview.datamodel.UniprotEntry">\r
  11               <field name="name" type="string" collection="vector"/>\r
  12               <field name="accession" type="string" collection="vector"/>\r
  13               <field name="UniprotSequence" type="jalview.datamodel.UniprotSequence">\r
  14                 <bind-xml name="sequence"/> \r
  15                </field>\r
  16                <field name="feature" type="jalview.datamodel.SequenceFeature" collection="vector"/>\r
  17                \r
  18                <field name="dbReference" type="jalview.datamodel.PDBEntry" collection="vector"/>\r
  19                        \r
  20          </class>\r
  21          \r
  22          \r
  23          <class name="jalview.datamodel.SequenceFeature">\r
  24                 <field name="type">\r
  25                         <bind-xml node="attribute"/>\r
  26                 </field>\r
  27                 <field name="description">\r
  28                          <bind-xml node="attribute"/>\r
  29                 </field>\r
  30                 <field name="status">\r
  31                         <bind-xml node="attribute"/>\r
  32                 </field>\r
  33                 <field name="position">\r
  34                  <bind-xml name="position" node="attribute" location="location/position"/>\r
  35                  </field>\r
  36                 <field name="begin">\r
  37                  <bind-xml name="position" node="attribute" location="location/begin"/>\r
  38                  </field>\r
  39                 <field name="end">\r
  40                  <bind-xml name="position" node="attribute" location="location/end"/>\r
  41                  </field>\r
  42          </class>\r
  43         \r
  44           <class name="jalview.datamodel.UniprotSequence">\r
  45                      <field name="content" type="string">\r
  46                         <bind-xml name="sequence" node="text"/>\r
  47                      </field>\r
  48          </class>\r
  49          \r
  50          <class name="jalview.datamodel.PDBEntry">\r
  51                 <field name="type"><bind-xml node="attribute"/></field>\r
  52                 <field name="id"><bind-xml node="attribute"/></field>\r
  53                 <field name="property" collection="hashtable">\r
  54                         <bind-xml name="property">\r
  55                            <class name="org.exolab.castor.mapping.MapItem">\r
  56                               <field name="key">\r
  57                                 <bind-xml name="type" node="attribute"/>\r
  58                               </field>\r
  59                               <field name="value">\r
  60                                 <bind-xml node="attribute"/>\r
  61                                 </field>\r
  62                            </class>\r
  63                         </bind-xml>\r
  64                 </field>\r
  65          </class>\r
  66 \r
  67 </mapping>\r