resources/uniprot_mapping.xml

   1 <?xml version="1.0"?>\r
   2 <!DOCTYPE mapping PUBLIC "-//EXOLAB/Castor Object Mapping DTD Version 1.0//EN" "http://castor.exolab.org/mapping.dtd">\r
   3 <mapping>\r
   4         <class name="jalview.datamodel.UniprotFile">\r
   5                  <map-to xml="uniprot"/>               \r
   6                  <field name="UniprotEntries" type="jalview.datamodel.UniprotEntry"  collection="vector">\r
   7                       <bind-xml name="entry"/>\r
   8                  </field>               \r
   9         </class>\r
  10                  \r
  11          <class name="jalview.datamodel.UniprotEntry">\r
  12               <field name="name" type="string" collection="vector"/>\r
  13               <field name="accession" type="string" collection="vector"/>\r
  14               <field name="UniprotSequence" type="jalview.datamodel.UniprotSequence">\r
  15                 <bind-xml name="sequence"/> \r
  16                </field>\r
  17                <field name="features" type="jalview.datamodel.SequenceFeature" collection="vector">\r
  18                   <bind-xml name="feature"/>\r
  19                </field>\r
  20                \r
  21          </class>\r
  22          \r
  23          \r
  24          <class name="jalview.datamodel.SequenceFeature">\r
  25                 <field name="type">\r
  26                         <bind-xml name="type" node="attribute"/>\r
  27                 </field>\r
  28                 <field name="description">\r
  29                          <bind-xml name="description" node="attribute"/>\r
  30                 </field>\r
  31                 <field name="status">\r
  32                         <bind-xml name="status" node="attribute"/>\r
  33                 </field>\r
  34                 <field name="position">\r
  35                  <bind-xml name="position" node="attribute" location="location/position"/>\r
  36                  </field>\r
  37                 <field name="begin">\r
  38                  <bind-xml name="position" node="attribute" location="location/begin"/>\r
  39                  </field>\r
  40                 <field name="end">\r
  41                  <bind-xml name="position" node="attribute" location="location/end"/>\r
  42                  </field>\r
  43          </class>\r
  44         \r
  45           <class name="jalview.datamodel.UniprotSequence">\r
  46                      <field name="content" type="string">\r
  47                         <bind-xml name="sequence" node="text"/>\r
  48                      </field>\r
  49          </class>\r
  50 \r
  51 </mapping>\r