2 * This class was automatically generated with
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3 * <a href="http://www.castor.org">Castor 0.9.6</a>, using an XML
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8 package jalview.schemabinding.version2;
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10 //---------------------------------/
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11 //- Imported classes and packages -/
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12 //---------------------------------/
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14 import org.exolab.castor.mapping.AccessMode;
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15 import org.exolab.castor.xml.TypeValidator;
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16 import org.exolab.castor.xml.XMLFieldDescriptor;
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17 import org.exolab.castor.xml.validators.*;
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20 * Class SequenceSetDescriptor.
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22 * @version $Revision$ $Date$
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24 public class SequenceSetDescriptor extends org.exolab.castor.xml.util.XMLClassDescriptorImpl {
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27 //--------------------------/
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28 //- Class/Member Variables -/
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29 //--------------------------/
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34 private java.lang.String nsPrefix;
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39 private java.lang.String nsURI;
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44 private java.lang.String xmlName;
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49 private org.exolab.castor.xml.XMLFieldDescriptor identity;
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56 public SequenceSetDescriptor() {
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58 nsURI = "www.vamsas.ac.uk/jalview/version2";
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59 xmlName = "SequenceSet";
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61 //-- set grouping compositor
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62 setCompositorAsSequence();
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63 org.exolab.castor.xml.util.XMLFieldDescriptorImpl desc = null;
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64 org.exolab.castor.xml.XMLFieldHandler handler = null;
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65 org.exolab.castor.xml.FieldValidator fieldValidator = null;
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66 //-- initialize attribute descriptors
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69 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_gapChar", "gapChar", org.exolab.castor.xml.NodeType.Attribute);
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70 desc.setImmutable(true);
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71 handler = (new org.exolab.castor.xml.XMLFieldHandler() {
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72 public java.lang.Object getValue( java.lang.Object object )
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73 throws IllegalStateException
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75 SequenceSet target = (SequenceSet) object;
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76 return target.getGapChar();
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78 public void setValue( java.lang.Object object, java.lang.Object value)
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79 throws IllegalStateException, IllegalArgumentException
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82 SequenceSet target = (SequenceSet) object;
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83 target.setGapChar( (java.lang.String) value);
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85 catch (java.lang.Exception ex) {
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86 throw new IllegalStateException(ex.toString());
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89 public java.lang.Object newInstance( java.lang.Object parent ) {
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93 desc.setHandler(handler);
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94 desc.setRequired(true);
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95 addFieldDescriptor(desc);
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97 //-- validation code for: _gapChar
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98 fieldValidator = new org.exolab.castor.xml.FieldValidator();
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99 fieldValidator.setMinOccurs(1);
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101 StringValidator typeValidator = new StringValidator();
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102 typeValidator.setWhiteSpace("preserve");
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103 fieldValidator.setValidator(typeValidator);
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105 desc.setValidator(fieldValidator);
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107 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Boolean.TYPE, "_aligned", "aligned", org.exolab.castor.xml.NodeType.Attribute);
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108 handler = (new org.exolab.castor.xml.XMLFieldHandler() {
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109 public java.lang.Object getValue( java.lang.Object object )
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110 throws IllegalStateException
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112 SequenceSet target = (SequenceSet) object;
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113 if(!target.hasAligned())
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115 return (target.getAligned() ? java.lang.Boolean.TRUE : java.lang.Boolean.FALSE);
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117 public void setValue( java.lang.Object object, java.lang.Object value)
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118 throws IllegalStateException, IllegalArgumentException
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121 SequenceSet target = (SequenceSet) object;
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122 // if null, use delete method for optional primitives
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123 if (value == null) {
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124 target.deleteAligned();
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127 target.setAligned( ((java.lang.Boolean)value).booleanValue());
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129 catch (java.lang.Exception ex) {
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130 throw new IllegalStateException(ex.toString());
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133 public java.lang.Object newInstance( java.lang.Object parent ) {
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137 desc.setHandler(handler);
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138 addFieldDescriptor(desc);
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140 //-- validation code for: _aligned
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141 fieldValidator = new org.exolab.castor.xml.FieldValidator();
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143 BooleanValidator typeValidator = new BooleanValidator();
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144 fieldValidator.setValidator(typeValidator);
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146 desc.setValidator(fieldValidator);
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147 //-- initialize element descriptors
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150 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(jalview.schemabinding.version2.Sequence.class, "_sequenceList", "Sequence", org.exolab.castor.xml.NodeType.Element);
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151 handler = (new org.exolab.castor.xml.XMLFieldHandler() {
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152 public java.lang.Object getValue( java.lang.Object object )
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153 throws IllegalStateException
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155 SequenceSet target = (SequenceSet) object;
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156 return target.getSequence();
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158 public void setValue( java.lang.Object object, java.lang.Object value)
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159 throws IllegalStateException, IllegalArgumentException
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162 SequenceSet target = (SequenceSet) object;
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163 target.addSequence( (jalview.schemabinding.version2.Sequence) value);
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165 catch (java.lang.Exception ex) {
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166 throw new IllegalStateException(ex.toString());
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169 public java.lang.Object newInstance( java.lang.Object parent ) {
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170 return new jalview.schemabinding.version2.Sequence();
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173 desc.setHandler(handler);
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174 desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");
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175 desc.setRequired(true);
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176 desc.setMultivalued(true);
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177 addFieldDescriptor(desc);
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179 //-- validation code for: _sequenceList
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180 fieldValidator = new org.exolab.castor.xml.FieldValidator();
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181 fieldValidator.setMinOccurs(1);
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184 desc.setValidator(fieldValidator);
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185 //-- _annotationList
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186 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(jalview.schemabinding.version2.Annotation.class, "_annotationList", "Annotation", org.exolab.castor.xml.NodeType.Element);
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187 handler = (new org.exolab.castor.xml.XMLFieldHandler() {
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188 public java.lang.Object getValue( java.lang.Object object )
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189 throws IllegalStateException
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191 SequenceSet target = (SequenceSet) object;
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192 return target.getAnnotation();
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194 public void setValue( java.lang.Object object, java.lang.Object value)
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195 throws IllegalStateException, IllegalArgumentException
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198 SequenceSet target = (SequenceSet) object;
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199 target.addAnnotation( (jalview.schemabinding.version2.Annotation) value);
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201 catch (java.lang.Exception ex) {
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202 throw new IllegalStateException(ex.toString());
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205 public java.lang.Object newInstance( java.lang.Object parent ) {
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206 return new jalview.schemabinding.version2.Annotation();
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209 desc.setHandler(handler);
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210 desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");
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211 desc.setMultivalued(true);
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212 addFieldDescriptor(desc);
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214 //-- validation code for: _annotationList
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215 fieldValidator = new org.exolab.castor.xml.FieldValidator();
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216 fieldValidator.setMinOccurs(0);
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219 desc.setValidator(fieldValidator);
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220 } //-- jalview.schemabinding.version2.SequenceSetDescriptor()
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228 * Method getAccessMode
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232 * @return AccessMode
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234 public org.exolab.castor.mapping.AccessMode getAccessMode()
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237 } //-- org.exolab.castor.mapping.AccessMode getAccessMode()
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240 * Method getExtends
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244 * @return ClassDescriptor
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246 public org.exolab.castor.mapping.ClassDescriptor getExtends()
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249 } //-- org.exolab.castor.mapping.ClassDescriptor getExtends()
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252 * Method getIdentity
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256 * @return FieldDescriptor
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258 public org.exolab.castor.mapping.FieldDescriptor getIdentity()
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261 } //-- org.exolab.castor.mapping.FieldDescriptor getIdentity()
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264 * Method getJavaClass
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270 public java.lang.Class getJavaClass()
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272 return jalview.schemabinding.version2.SequenceSet.class;
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273 } //-- java.lang.Class getJavaClass()
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276 * Method getNameSpacePrefix
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282 public java.lang.String getNameSpacePrefix()
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285 } //-- java.lang.String getNameSpacePrefix()
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288 * Method getNameSpaceURI
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294 public java.lang.String getNameSpaceURI()
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297 } //-- java.lang.String getNameSpaceURI()
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300 * Method getValidator
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304 * @return TypeValidator
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306 public org.exolab.castor.xml.TypeValidator getValidator()
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309 } //-- org.exolab.castor.xml.TypeValidator getValidator()
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312 * Method getXMLName
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318 public java.lang.String getXMLName()
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321 } //-- java.lang.String getXMLName()
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