schemas/jalview.xsd

   1 <?xml version="1.0" encoding="UTF-8"?>\r
   2 <xs:schema xmlns:xs="http://www.w3.org/2001/XMLSchema" \r
   3                         xmlns:vamsas="www.vamsas.org" \r
   4                         xmlns:jalview="www.jalview.org/colours" \r
   5                         targetNamespace="www.jalview.org" \r
   6                         elementFormDefault="qualified" \r
   7                         attributeFormDefault="unqualified">\r
   8 \r
   9 <xs:import schemaLocation="vamsas.xsd" namespace="www.vamsas.org" />\r
  10 <xs:import schemaLocation="jalviewUserColours.xsd" namespace="www.jalview.org/colours"/>\r
  11 \r
  12 <xs:complexType name="JalviewModel">\r
  13 \r
  14     <xs:sequence>\r
  15 \r
  16             <xs:element name="creationDate" type="xs:dateTime"/>\r
  17 \r
  18         <xs:element name="vamsasModel" type="vamsas:VAMSAS"/>\r
  19 \r
  20         <xs:sequence>\r
  21 \r
  22             <xs:element name="JSeq" maxOccurs="unbounded">\r
  23 \r
  24                 <xs:complexType>\r
  25                     \r
  26                                         <xs:attribute name="colour" type="xs:int" use="optional"/>\r
  27                                         \r
  28                     <xs:attribute name="start" type="xs:int" use="required"/>\r
  29 \r
  30                     <xs:attribute name="end" type="xs:int" use="required"/>\r
  31 \r
  32                     <xs:attribute name="id" type="xs:int" use="required"/>\r
  33 \r
  34                 </xs:complexType>\r
  35 \r
  36             </xs:element>\r
  37 \r
  38             <xs:element name="JGroup" maxOccurs="unbounded">\r
  39 \r
  40                 <xs:complexType>\r
  41 \r
  42                     <xs:sequence minOccurs="1">\r
  43 \r
  44                         <xs:element name="seq" maxOccurs="unbounded" type="xs:int"/>\r
  45                                         \r
  46                     </xs:sequence>\r
  47 \r
  48                         <xs:attribute name="start" type="xs:int"/>\r
  49 \r
  50                         <xs:attribute name="end" type="xs:int"/>\r
  51 \r
  52                         <xs:attribute name="name" type="xs:string"/>\r
  53 \r
  54                         <xs:attribute name="colour" type="xs:string"/>\r
  55 \r
  56                                                 <xs:attribute name="consThreshold" type="xs:int"/>\r
  57 \r
  58                                                 <xs:attribute name="pidThreshold" type="xs:int"/>\r
  59 \r
  60                         <xs:attribute name="outlineColour" type="xs:int"/>\r
  61 \r
  62                         <xs:attribute name="displayBoxes" type="xs:boolean"/>\r
  63 \r
  64                         <xs:attribute name="displayText" type="xs:boolean"/>\r
  65 \r
  66                         <xs:attribute name="colourText" type="xs:boolean"/>\r
  67 \r
  68                 </xs:complexType>\r
  69 \r
  70             </xs:element>\r
  71 \r
  72             <xs:element name="Viewport" maxOccurs="unbounded">\r
  73 \r
  74                 <xs:complexType>\r
  75                                         <xs:attribute name="conservationSelected" type="xs:boolean"/>\r
  76 \r
  77                                                 <xs:attribute name="pidSelected" type="xs:boolean"/>\r
  78 \r
  79                         <xs:attribute name="bgColour" type="xs:string"/>\r
  80 \r
  81                                                 <xs:attribute name="consThreshold" type="xs:int"/>\r
  82 \r
  83                                                 <xs:attribute name="pidThreshold" type="xs:int"/>\r
  84 \r
  85                         <xs:attribute name="title" type="xs:string"/>\r
  86 \r
  87                         <xs:attribute name="showFullId" type="xs:boolean"/>\r
  88 \r
  89                         <xs:attribute name="showText" type="xs:boolean"/>\r
  90 \r
  91                         <xs:attribute name="showColourText" type="xs:boolean"/>\r
  92 \r
  93                         <xs:attribute name="showBoxes" type="xs:boolean"/>\r
  94 \r
  95                         <xs:attribute name="wrapAlignment" type="xs:boolean"/>\r
  96 \r
  97                         <xs:attribute name="renderGaps" type="xs:boolean"/>\r
  98 \r
  99                         <xs:attribute name="showSequenceFeatures" type="xs:boolean"/>\r
 100 \r
 101                                                 <xs:attribute name="showAnnotation" type="xs:boolean"/>\r
 102 \r
 103                         <xs:attribute name="showConservation" type="xs:boolean"/>\r
 104 \r
 105                         <xs:attribute name="showQuality" type="xs:boolean"/>\r
 106 \r
 107                                                 <xs:attribute name="showIdentity" type="xs:boolean"/>\r
 108 \r
 109                     <xs:attribute name="xpos" type="xs:int"/>\r
 110 \r
 111                     <xs:attribute name="ypos" type="xs:int"/>\r
 112 \r
 113                     <xs:attribute name="width" type="xs:int"/>\r
 114 \r
 115                     <xs:attribute name="height" type="xs:int"/>\r
 116 \r
 117                                     <xs:attribute name="startRes" type="xs:int"/>\r
 118                                         <xs:attribute name="startSeq" type="xs:int"/>\r
 119                                         <xs:attribute name="fontName" type="xs:string"/>\r
 120                                         <xs:attribute name="fontSize" type="xs:int"/>\r
 121                                         <xs:attribute name="fontStyle" type="xs:int"/>\r
 122                                 \r
 123 \r
 124                 </xs:complexType>\r
 125 \r
 126             </xs:element>    \r
 127 \r
 128                         <xs:element name="UserColours" maxOccurs="unbounded">\r
 129                 <xs:complexType>  \r
 130                                          <xs:sequence minOccurs="1">\r
 131                                                 <xs:element name="UserColourScheme" type="jalview:JalviewUserColours"/>\r
 132                                          </xs:sequence>\r
 133                                          <xs:attribute name="id" type="xs:string"/>\r
 134                  </xs:complexType>\r
 135             </xs:element>\r
 136 \r
 137         </xs:sequence>\r
 138 \r
 139     </xs:sequence>\r
 140 \r
 141 </xs:complexType>\r
 142 \r
 143 \r
 144 \r
 145 \r
 146 </xs:schema>\r