1 <?xml version="1.0" encoding="UTF-8"?>
\r
2 <xs:schema xmlns:xs="http://www.w3.org/2001/XMLSchema"
\r
3 xmlns:vamsas="www.vamsas.org"
\r
4 xmlns:jalview="www.jalview.org"
\r
5 targetNamespace="www.jalview.org"
\r
6 elementFormDefault="qualified"
\r
7 attributeFormDefault="unqualified">
\r
9 <xs:import schemaLocation="vamsas.xsd" namespace="www.vamsas.org" />
\r
11 <xs:complexType name="JalviewModel">
\r
15 <xs:element name="creationDate" type="xs:dateTime"/>
\r
17 <xs:element name="vamsasModel" type="vamsas:VAMSAS"/>
\r
21 <xs:element name="JSeq" maxOccurs="unbounded">
\r
25 <xs:attribute name="colour" type="xs:int" use="optional"/>
\r
27 <xs:attribute name="start" type="xs:int" use="required"/>
\r
29 <xs:attribute name="end" type="xs:int" use="required"/>
\r
31 <xs:attribute name="id" type="xs:int" use="required"/>
\r
37 <xs:element name="JGroup" maxOccurs="unbounded">
\r
41 <xs:sequence minOccurs="1">
\r
43 <xs:element name="seq" maxOccurs="unbounded" type="xs:int"/>
\r
47 <xs:attribute name="start" type="xs:int"/>
\r
49 <xs:attribute name="end" type="xs:int"/>
\r
51 <xs:attribute name="name" type="xs:string"/>
\r
53 <xs:attribute name="colour" type="xs:string"/>
\r
55 <xs:attribute name="consThreshold" type="xs:int"/>
\r
57 <xs:attribute name="pidThreshold" type="xs:int"/>
\r
59 <xs:attribute name="outlineColour" type="xs:int"/>
\r
61 <xs:attribute name="displayBoxes" type="xs:boolean"/>
\r
63 <xs:attribute name="displayText" type="xs:boolean"/>
\r
65 <xs:attribute name="colourText" type="xs:boolean"/>
\r
71 <xs:element name="Viewport" maxOccurs="unbounded">
\r
74 <xs:attribute name="conservationSelected" type="xs:boolean"/>
\r
76 <xs:attribute name="pidSelected" type="xs:boolean"/>
\r
78 <xs:attribute name="bgColour" type="xs:string"/>
\r
80 <xs:attribute name="consThreshold" type="xs:int"/>
\r
82 <xs:attribute name="pidThreshold" type="xs:int"/>
\r
84 <xs:attribute name="title" type="xs:string"/>
\r
86 <xs:attribute name="showFullId" type="xs:boolean"/>
\r
88 <xs:attribute name="showText" type="xs:boolean"/>
\r
90 <xs:attribute name="showColourText" type="xs:boolean"/>
\r
92 <xs:attribute name="showBoxes" type="xs:boolean"/>
\r
94 <xs:attribute name="wrapAlignment" type="xs:boolean"/>
\r
96 <xs:attribute name="renderGaps" type="xs:boolean"/>
\r
98 <xs:attribute name="showSequenceFeatures" type="xs:boolean"/>
\r
100 <xs:attribute name="showAnnotation" type="xs:boolean"/>
\r
102 <xs:attribute name="showConservation" type="xs:boolean"/>
\r
104 <xs:attribute name="showQuality" type="xs:boolean"/>
\r
106 <xs:attribute name="showIdentity" type="xs:boolean"/>
\r
108 <xs:attribute name="xpos" type="xs:int"/>
\r
110 <xs:attribute name="ypos" type="xs:int"/>
\r
112 <xs:attribute name="width" type="xs:int"/>
\r
114 <xs:attribute name="height" type="xs:int"/>
\r
116 <xs:attribute name="startRes" type="xs:int"/>
\r
117 <xs:attribute name="startSeq" type="xs:int"/>
\r
118 <xs:attribute name="fontName" type="xs:string"/>
\r
119 <xs:attribute name="fontSize" type="xs:int"/>
\r
120 <xs:attribute name="fontStyle" type="xs:int"/>
\r