schemas/vamsas.xsd

   1 <?xml version="1.0" encoding="UTF-8"?>\r
   2 <!-- edited with XMLSpy v2005 rel. 3 U (http://www.altova.com) by lj (jl) -->\r
   3 <xs:schema xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:vamsas="www.vamsas.org" targetNamespace="www.vamsas.org" elementFormDefault="qualified" attributeFormDefault="unqualified">\r
   4         <xs:complexType name="VAMSAS">\r
   5                 <xs:sequence>\r
   6                         <xs:element name="Alignment" minOccurs="0" maxOccurs="unbounded">\r
   7                                 <xs:complexType>\r
   8                                         <xs:sequence>\r
   9                                                 <xs:element name="Annotation" minOccurs="0">\r
  10                                                         <xs:complexType>\r
  11                                                                 <xs:sequence>\r
  12                                                                         <xs:element ref="vamsas:annotationElement" maxOccurs="unbounded"/>\r
  13                                                                         <xs:element name="label" type="xs:string"/>\r
  14                                                                         <xs:element name="description" type="xs:string"/>\r
  15                                                                 </xs:sequence>\r
  16                                                                 <xs:attribute name="graph" type="xs:boolean" use="required"/>\r
  17                                                         </xs:complexType>\r
  18                                                 </xs:element>\r
  19                                                 <xs:element ref="vamsas:SequenceSet"/>\r
  20                                         </xs:sequence>\r
  21                                 </xs:complexType>\r
  22                         </xs:element>\r
  23                         <xs:element name="Tree" type="xs:string" minOccurs="0" maxOccurs="unbounded"/>\r
  24                         <xs:element ref="vamsas:SequenceSet" minOccurs="0" maxOccurs="unbounded"/>\r
  25                 </xs:sequence>\r
  26         </xs:complexType>\r
  27         <xs:element name="SequenceSet">\r
  28                 <xs:complexType>\r
  29                         <xs:sequence>\r
  30                                 <xs:element name="Sequence" type="vamsas:SequenceType" maxOccurs="unbounded"/>\r
  31                                 <xs:element name="Annotation" minOccurs="0" maxOccurs="unbounded">\r
  32                                         <xs:complexType>\r
  33                                                 <xs:sequence>\r
  34                                                         <xs:element name="description" type="xs:string" minOccurs="0"/>\r
  35                                                         <xs:element name="status" type="xs:string" minOccurs="0"/>\r
  36                                                         <xs:element ref="vamsas:annotationElement" minOccurs="0" maxOccurs="unbounded"/>\r
  37                                                 </xs:sequence>\r
  38                                                 <xs:attribute name="type" type="xs:string" use="required"/>\r
  39                                                 <xs:attribute name="end" type="xs:string" use="required"/>\r
  40                                                 <xs:attribute name="begin" type="xs:string" use="required"/>\r
  41                                                 <xs:attribute name="seqRef" type="xs:string" use="required"/>\r
  42                                         </xs:complexType>\r
  43                                 </xs:element>\r
  44                         </xs:sequence>\r
  45                         <xs:attribute name="gapChar" type="xs:string" use="required"/>\r
  46                         <xs:attribute name="aligned" type="xs:boolean" use="optional"/>\r
  47                 </xs:complexType>\r
  48         </xs:element>\r
  49         <xs:element name="annotationElement">\r
  50                 <xs:complexType>\r
  51                         <xs:sequence>\r
  52                                 <xs:element name="displayCharacter" type="xs:string"/>\r
  53                                 <xs:element name="description" type="xs:string"/>\r
  54                                 <xs:element name="secondaryStructure">\r
  55                                         <xs:simpleType>\r
  56                                                 <xs:restriction base="xs:string">\r
  57                                                         <xs:length value="1"/>\r
  58                                                 </xs:restriction>\r
  59                                         </xs:simpleType>\r
  60                                 </xs:element>\r
  61                                 <xs:element name="value" type="xs:float"/>\r
  62                         </xs:sequence>\r
  63                         <xs:attribute name="position" type="xs:int" use="required"/>\r
  64                 </xs:complexType>\r
  65         </xs:element>\r
  66         <xs:complexType name="SequenceType">\r
  67                 <xs:sequence>\r
  68                         <xs:element name="sequence" type="xs:string"/>\r
  69                         <xs:element name="name" type="xs:string"/>\r
  70                 </xs:sequence>\r
  71                 <xs:attribute name="id" type="xs:string"/>\r
  72         </xs:complexType>\r
  73 </xs:schema>\r