1 <?xml version="1.0" encoding="UTF-8"?>
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2 <!-- edited with XMLSpy v2006 sp1 U (http://www.altova.com) by ioh[ (o[ih[oh) -->
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3 <xs:schema xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:vamsas="www.vamsas.ac.uk/jalview/version2" targetNamespace="www.vamsas.ac.uk/jalview/version2" elementFormDefault="qualified" attributeFormDefault="unqualified">
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4 <xs:complexType name="VAMSAS">
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6 <xs:element name="Alignment" minOccurs="0" maxOccurs="unbounded">
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9 <xs:element name="Annotation" minOccurs="0">
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12 <xs:element ref="vamsas:annotationElement" maxOccurs="unbounded"/>
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13 <xs:element name="label" type="xs:string"/>
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14 <xs:element name="description" type="xs:string"/>
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15 <xs:element name="thresholdLine" minOccurs="0">
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17 <xs:attribute name="label" type="xs:string"/>
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18 <xs:attribute name="value" type="xs:float"/>
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19 <xs:attribute name="colour" type="xs:int"/>
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23 <xs:attribute name="graph" type="xs:boolean" use="required"/>
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24 <xs:attribute name="graphType" type="xs:int" use="optional"/>
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27 <xs:element ref="vamsas:SequenceSet"/>
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31 <xs:element name="Tree" type="xs:string" minOccurs="0" maxOccurs="unbounded"/>
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32 <xs:element ref="vamsas:SequenceSet" minOccurs="0" maxOccurs="unbounded"/>
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35 <xs:element name="SequenceSet">
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38 <xs:element name="Sequence" type="vamsas:SequenceType" maxOccurs="unbounded"/>
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39 <xs:element name="Annotation" minOccurs="0" maxOccurs="unbounded">
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42 <xs:element name="description" type="xs:string" minOccurs="0"/>
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43 <xs:element name="status" type="xs:string" minOccurs="0"/>
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44 <xs:element ref="vamsas:annotationElement" minOccurs="0" maxOccurs="unbounded"/>
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46 <xs:attribute name="type" type="xs:string" use="required"/>
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47 <xs:attribute name="end" type="xs:string" use="required"/>
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48 <xs:attribute name="begin" type="xs:string" use="required"/>
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49 <xs:attribute name="seqRef" type="xs:string" use="required"/>
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53 <xs:attribute name="gapChar" type="xs:string" use="required"/>
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54 <xs:attribute name="aligned" type="xs:boolean" use="optional"/>
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57 <xs:element name="annotationElement">
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60 <xs:element name="displayCharacter" type="xs:string"/>
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61 <xs:element name="description" type="xs:string"/>
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62 <xs:element name="secondaryStructure">
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64 <xs:restriction base="xs:string">
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65 <xs:length value="1"/>
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69 <xs:element name="value" type="xs:float"/>
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71 <xs:attribute name="position" type="xs:int" use="required"/>
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74 <xs:complexType name="SequenceType">
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76 <xs:element name="sequence" type="xs:string"/>
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77 <xs:element name="name" type="xs:string"/>
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79 <xs:attribute name="id" type="xs:string"/>
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80 <xs:attribute name="description" type="xs:string"/>
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