1 <?xml version="1.0" encoding="UTF-8"?>
2 <!-- edited with XMLSpy v2006 sp1 U (http://www.altova.com) by ioh[ (o[ih[oh) -->
3 <xs:schema xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:vamsas="www.vamsas.ac.uk/jalview/version2" targetNamespace="www.vamsas.ac.uk/jalview/version2" elementFormDefault="qualified" attributeFormDefault="unqualified">
4 <xs:complexType name="VAMSAS">
6 <xs:element name="Tree" type="xs:string" minOccurs="0" maxOccurs="unbounded"/>
7 <xs:element ref="vamsas:SequenceSet" minOccurs="0" maxOccurs="unbounded"/>
10 <xs:element name="SequenceSet">
13 <xs:element name="Sequence" minOccurs="0" maxOccurs="unbounded">
16 <xs:extension base="vamsas:SequenceType">
18 <xs:element name="DBRef" minOccurs="0" maxOccurs="unbounded">
20 <xs:attribute name="source" type="xs:string"/>
21 <xs:attribute name="version" type="xs:string"/>
22 <xs:attribute name="accessionId" type="xs:string"/>
30 <xs:element name="Annotation" minOccurs="0" maxOccurs="unbounded">
33 <xs:element ref="vamsas:annotationElement" minOccurs="0" maxOccurs="unbounded"/>
34 <xs:element name="label" type="xs:string"/>
35 <xs:element name="description" type="xs:string" minOccurs="0"/>
36 <xs:element name="thresholdLine" minOccurs="0">
38 <xs:attribute name="label" type="xs:string"/>
39 <xs:attribute name="value" type="xs:float"/>
40 <xs:attribute name="colour" type="xs:int"/>
44 <xs:attribute name="graph" type="xs:boolean" use="required"/>
45 <xs:attribute name="graphType" type="xs:int" use="optional"/>
46 <xs:attribute name="sequenceRef" type="xs:string" use="optional"/>
47 <xs:attribute name="graphColour" type="xs:int" use="optional"/>
48 <xs:attribute name="graphGroup" type="xs:int" use="optional"/>
49 <xs:attribute name="id" type="xs:string" use="optional"/>
50 <xs:attribute name="scoreOnly" type="xs:boolean" use="optional" default="false"/>
51 <xs:attribute name="score" type="xs:double" use="optional"/>
54 <xs:element name="sequenceSetProperties" minOccurs="0" maxOccurs="unbounded">
56 <xs:attribute name="key" type="xs:string"/>
57 <xs:attribute name="value" type="xs:string"/>
61 <xs:attribute name="gapChar" type="xs:string" use="required"/>
64 <xs:element name="annotationElement">
67 <xs:element name="displayCharacter" type="xs:string" minOccurs="0"/>
68 <xs:element name="description" type="xs:string" minOccurs="0"/>
69 <xs:element name="secondaryStructure" minOccurs="0">
71 <xs:restriction base="xs:string">
72 <xs:length value="1"/>
76 <xs:element name="value" type="xs:float" minOccurs="0"/>
78 <xs:attribute name="position" type="xs:int" use="required"/>
79 <xs:attribute name="colour" type="xs:int" use="optional"/>
82 <xs:complexType name="SequenceType">
84 <xs:element name="sequence" type="xs:string" minOccurs="0"/>
85 <xs:element name="name" type="xs:string" minOccurs="0"/>
87 <xs:attribute name="id" type="xs:string"/>
88 <xs:attribute name="description" type="xs:string"/>