schemas/vamsas.xsd

   1 <?xml version="1.0" encoding="UTF-8"?>\r
   2 <!-- edited with XMLSpy v2006 sp1 U (http://www.altova.com) by ioh[ (o[ih[oh) -->\r
   3 <xs:schema xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:vamsas="www.vamsas.ac.uk/jalview/version2" targetNamespace="www.vamsas.ac.uk/jalview/version2" elementFormDefault="qualified" attributeFormDefault="unqualified">\r
   4         <xs:complexType name="VAMSAS">\r
   5                 <xs:sequence>\r
   6                         <xs:element name="Alignment" minOccurs="0" maxOccurs="unbounded">\r
   7                                 <xs:complexType>\r
   8                                         <xs:sequence>\r
   9                                                 <xs:element name="Annotation" minOccurs="0">\r
  10                                                         <xs:complexType>\r
  11                                                                 <xs:sequence>\r
  12                                                                         <xs:element ref="vamsas:annotationElement" minOccurs="0" maxOccurs="unbounded"/>\r
  13                                                                         <xs:element name="label" type="xs:string"/>\r
  14                                                                         <xs:element name="description" type="xs:string" minOccurs="0"/>\r
  15                                                                         <xs:element name="thresholdLine" minOccurs="0">\r
  16                                                                                 <xs:complexType>\r
  17                                                                                         <xs:attribute name="label" type="xs:string"/>\r
  18                                                                                         <xs:attribute name="value" type="xs:float"/>\r
  19                                                                                         <xs:attribute name="colour" type="xs:int"/>\r
  20                                                                                 </xs:complexType>\r
  21                                                                         </xs:element>\r
  22                                                                 </xs:sequence>\r
  23                                                                 <xs:attribute name="graph" type="xs:boolean" use="required"/>\r
  24                                                                 <xs:attribute name="graphType" type="xs:int" use="optional"/>\r
  25                                                                 <xs:attribute name="sequenceRef" type="xs:string" use="optional"/>\r
  26                                                                 <xs:attribute name="graphColour" type="xs:int" use="optional"/>\r
  27                                                                 <xs:attribute name="graphGroup" type="xs:int" use="optional"/>\r
  28                                                         </xs:complexType>\r
  29                                                 </xs:element>\r
  30                                                 <xs:element ref="vamsas:SequenceSet"/>\r
  31                                         </xs:sequence>\r
  32                                 </xs:complexType>\r
  33                         </xs:element>\r
  34                         <xs:element name="Tree" type="xs:string" minOccurs="0" maxOccurs="unbounded"/>\r
  35                         <xs:element ref="vamsas:SequenceSet" minOccurs="0" maxOccurs="unbounded"/>\r
  36                 </xs:sequence>\r
  37         </xs:complexType>\r
  38         <xs:element name="SequenceSet">\r
  39                 <xs:complexType>\r
  40                         <xs:sequence>\r
  41                                 <xs:element name="Sequence" maxOccurs="unbounded">\r
  42                                         <xs:complexType>\r
  43                                                 <xs:complexContent>\r
  44                                                         <xs:extension base="vamsas:SequenceType">\r
  45                                                                 <xs:sequence>\r
  46                                                                         <xs:element name="DBRef" minOccurs="0" maxOccurs="unbounded">\r
  47                                                                                 <xs:complexType>\r
  48                                                                                         <xs:attribute name="source" type="xs:string"/>\r
  49                                                                                         <xs:attribute name="version" type="xs:string"/>\r
  50                                                                                         <xs:attribute name="accessionId" type="xs:string"/>\r
  51                                                                                 </xs:complexType>\r
  52                                                                         </xs:element>\r
  53                                                                 </xs:sequence>\r
  54                                                         </xs:extension>\r
  55                                                 </xs:complexContent>\r
  56                                         </xs:complexType>\r
  57                                 </xs:element>\r
  58                                 <xs:element name="Annotation" minOccurs="0" maxOccurs="unbounded">\r
  59                                         <xs:complexType>\r
  60                                                 <xs:sequence>\r
  61                                                         <xs:element name="description" type="xs:string" minOccurs="0"/>\r
  62                                                         <xs:element name="status" type="xs:string" minOccurs="0"/>\r
  63                                                         <xs:element ref="vamsas:annotationElement" minOccurs="0" maxOccurs="unbounded"/>\r
  64                                                 </xs:sequence>\r
  65                                                 <xs:attribute name="type" type="xs:string" use="required"/>\r
  66                                                 <xs:attribute name="end" type="xs:string" use="required"/>\r
  67                                                 <xs:attribute name="begin" type="xs:string" use="required"/>\r
  68                                                 <xs:attribute name="seqRef" type="xs:string" use="required"/>\r
  69                                         </xs:complexType>\r
  70                                 </xs:element>\r
  71                         </xs:sequence>\r
  72                         <xs:attribute name="gapChar" type="xs:string" use="required"/>\r
  73                         <xs:attribute name="aligned" type="xs:boolean" use="optional"/>\r
  74                 </xs:complexType>\r
  75         </xs:element>\r
  76         <xs:element name="annotationElement">\r
  77                 <xs:complexType>\r
  78                         <xs:sequence>\r
  79                                 <xs:element name="displayCharacter" type="xs:string" minOccurs="0"/>\r
  80                                 <xs:element name="description" type="xs:string" minOccurs="0"/>\r
  81                                 <xs:element name="secondaryStructure" minOccurs="0">\r
  82                                         <xs:simpleType>\r
  83                                                 <xs:restriction base="xs:string">\r
  84                                                         <xs:length value="1"/>\r
  85                                                 </xs:restriction>\r
  86                                         </xs:simpleType>\r
  87                                 </xs:element>\r
  88                                 <xs:element name="value" type="xs:float" minOccurs="0"/>\r
  89                         </xs:sequence>\r
  90                         <xs:attribute name="position" type="xs:int" use="required"/>\r
  91                         <xs:attribute name="colour" type="xs:int" use="optional"/>\r
  92                 </xs:complexType>\r
  93         </xs:element>\r
  94         <xs:complexType name="SequenceType">\r
  95                 <xs:sequence>\r
  96                         <xs:element name="sequence" type="xs:string"/>\r
  97                         <xs:element name="name" type="xs:string"/>\r
  98                 </xs:sequence>\r
  99                 <xs:attribute name="id" type="xs:string"/>\r
 100                 <xs:attribute name="description" type="xs:string"/>\r
 101         </xs:complexType>\r
 102 </xs:schema>\r