schemas/vamsasJvV1.xsd

   1 <?xml version="1.0" encoding="UTF-8"?>\r
   2 <!--\r
   3   Jalview - A Sequence Alignment Editor and Viewer (Version 2.4.0.b2)\r
   4   Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
   5   \r
   6   This program is free software; you can redistribute it and/or\r
   7   modify it under the terms of the GNU General Public License\r
   8   as published by the Free Software Foundation; either version 2\r
   9   of the License, or (at your option) any later version.\r
  10   \r
  11   This program is distributed in the hope that it will be useful,\r
  12   but WITHOUT ANY WARRANTY; without even the implied warranty of\r
  13   MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the\r
  14   GNU General Public License for more details.\r
  15   \r
  16   You should have received a copy of the GNU General Public License\r
  17   along with this program; if not, write to the Free Software\r
  18   Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA\r
  19 -->\r
  20 <!-- edited with XMLSpy v2006 sp1 U (http://www.altova.com) by ioh[ (o[ih[oh) -->\r
  21 <xs:schema xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:vamsas="www.vamsas.org" targetNamespace="www.vamsas.org" elementFormDefault="qualified" attributeFormDefault="unqualified">\r
  22         <xs:complexType name="VAMSAS">\r
  23                 <xs:sequence>\r
  24                         <xs:element name="Alignment" minOccurs="0" maxOccurs="unbounded">\r
  25                                 <xs:complexType>\r
  26                                         <xs:sequence>\r
  27                                                 <xs:element name="Annotation" minOccurs="0">\r
  28                                                         <xs:complexType>\r
  29                                                                 <xs:sequence>\r
  30                                                                         <xs:element ref="vamsas:annotationElement" maxOccurs="unbounded"/>\r
  31                                                                         <xs:element name="label" type="xs:string"/>\r
  32                                                                         <xs:element name="description" type="xs:string"/>\r
  33                                                                 </xs:sequence>\r
  34                                                                 <xs:attribute name="graph" type="xs:boolean" use="required"/>\r
  35                                                                 <xs:attribute name="graphType" type="xs:int" use="optional"/>\r
  36                                                         </xs:complexType>\r
  37                                                 </xs:element>\r
  38                                                 <xs:element ref="vamsas:SequenceSet"/>\r
  39                                         </xs:sequence>\r
  40                                 </xs:complexType>\r
  41                         </xs:element>\r
  42                         <xs:element name="Tree" type="xs:string" minOccurs="0" maxOccurs="unbounded"/>\r
  43                         <xs:element ref="vamsas:SequenceSet" minOccurs="0" maxOccurs="unbounded"/>\r
  44                 </xs:sequence>\r
  45         </xs:complexType>\r
  46         <xs:element name="SequenceSet">\r
  47                 <xs:complexType>\r
  48                         <xs:sequence>\r
  49                                 <xs:element name="Sequence" type="vamsas:SequenceType" maxOccurs="unbounded"/>\r
  50                                 <xs:element name="Annotation" minOccurs="0" maxOccurs="unbounded">\r
  51                                         <xs:complexType>\r
  52                                                 <xs:sequence>\r
  53                                                         <xs:element name="description" type="xs:string" minOccurs="0"/>\r
  54                                                         <xs:element name="status" type="xs:string" minOccurs="0"/>\r
  55                                                         <xs:element ref="vamsas:annotationElement" minOccurs="0" maxOccurs="unbounded"/>\r
  56                                                 </xs:sequence>\r
  57                                                 <xs:attribute name="type" type="xs:string" use="required"/>\r
  58                                                 <xs:attribute name="end" type="xs:string" use="required"/>\r
  59                                                 <xs:attribute name="begin" type="xs:string" use="required"/>\r
  60                                                 <xs:attribute name="seqRef" type="xs:string" use="required"/>\r
  61                                         </xs:complexType>\r
  62                                 </xs:element>\r
  63                         </xs:sequence>\r
  64                         <xs:attribute name="gapChar" type="xs:string" use="required"/>\r
  65                         <xs:attribute name="aligned" type="xs:boolean" use="optional"/>\r
  66                 </xs:complexType>\r
  67         </xs:element>\r
  68         <xs:element name="annotationElement">\r
  69                 <xs:complexType>\r
  70                         <xs:sequence>\r
  71                                 <xs:element name="displayCharacter" type="xs:string"/>\r
  72                                 <xs:element name="description" type="xs:string"/>\r
  73                                 <xs:element name="secondaryStructure">\r
  74                                         <xs:simpleType>\r
  75                                                 <xs:restriction base="xs:string">\r
  76                                                         <xs:length value="1"/>\r
  77                                                 </xs:restriction>\r
  78                                         </xs:simpleType>\r
  79                                 </xs:element>\r
  80                                 <xs:element name="value" type="xs:float"/>\r
  81                         </xs:sequence>\r
  82                         <xs:attribute name="position" type="xs:int" use="required"/>\r
  83                 </xs:complexType>\r
  84         </xs:element>\r
  85         <xs:complexType name="SequenceType">\r
  86                 <xs:sequence>\r
  87                         <xs:element name="sequence" type="xs:string"/>\r
  88                         <xs:element name="name" type="xs:string"/>\r
  89                 </xs:sequence>\r
  90                 <xs:attribute name="id" type="xs:string"/>\r
  91         </xs:complexType>\r
  92 </xs:schema>\r