1 <?xml version="1.0" encoding="UTF-8"?>
3 Jalview - A Sequence Alignment Editor and Viewer (Version 2.8)
4 Copyright (C) 2012 J Procter, AM Waterhouse, LM Lui, J Engelhardt, G Barton, M Clamp, S Searle
6 This file is part of Jalview.
8 Jalview is free software: you can redistribute it and/or
9 modify it under the terms of the GNU General Public License
10 as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
12 Jalview is distributed in the hope that it will be useful, but
13 WITHOUT ANY WARRANTY; without even the implied warranty
14 of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15 PURPOSE. See the GNU General Public License for more details.
17 You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19 <!-- edited with XMLSpy v2006 sp1 U (http://www.altova.com) by ioh[ (o[ih[oh) -->
20 <xs:schema xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:vamsas="www.vamsas.org" targetNamespace="www.vamsas.org" elementFormDefault="qualified" attributeFormDefault="unqualified">
21 <xs:complexType name="VAMSAS">
23 <xs:element name="Alignment" minOccurs="0" maxOccurs="unbounded">
26 <xs:element name="Annotation" minOccurs="0">
29 <xs:element ref="vamsas:annotationElement" maxOccurs="unbounded"/>
30 <xs:element name="label" type="xs:string"/>
31 <xs:element name="description" type="xs:string"/>
33 <xs:attribute name="graph" type="xs:boolean" use="required"/>
34 <xs:attribute name="graphType" type="xs:int" use="optional"/>
37 <xs:element ref="vamsas:SequenceSet"/>
41 <xs:element name="Tree" type="xs:string" minOccurs="0" maxOccurs="unbounded"/>
42 <xs:element ref="vamsas:SequenceSet" minOccurs="0" maxOccurs="unbounded"/>
45 <xs:element name="SequenceSet">
48 <xs:element name="Sequence" type="vamsas:SequenceType" maxOccurs="unbounded"/>
49 <xs:element name="Annotation" minOccurs="0" maxOccurs="unbounded">
52 <xs:element name="description" type="xs:string" minOccurs="0"/>
53 <xs:element name="status" type="xs:string" minOccurs="0"/>
54 <xs:element ref="vamsas:annotationElement" minOccurs="0" maxOccurs="unbounded"/>
56 <xs:attribute name="type" type="xs:string" use="required"/>
57 <xs:attribute name="end" type="xs:string" use="required"/>
58 <xs:attribute name="begin" type="xs:string" use="required"/>
59 <xs:attribute name="seqRef" type="xs:string" use="required"/>
63 <xs:attribute name="gapChar" type="xs:string" use="required"/>
64 <xs:attribute name="aligned" type="xs:boolean" use="optional"/>
67 <xs:element name="annotationElement">
70 <xs:element name="displayCharacter" type="xs:string"/>
71 <xs:element name="description" type="xs:string"/>
72 <xs:element name="secondaryStructure">
74 <xs:restriction base="xs:string">
75 <xs:length value="1"/>
79 <xs:element name="value" type="xs:float"/>
81 <xs:attribute name="position" type="xs:int" use="required"/>
84 <xs:complexType name="SequenceType">
86 <xs:element name="sequence" type="xs:string"/>
87 <xs:element name="name" type="xs:string"/>
89 <xs:attribute name="id" type="xs:string"/>