1 <?xml version="1.0" encoding="UTF-8"?>
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3 Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)
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4 Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
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6 This program is free software; you can redistribute it and/or
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7 modify it under the terms of the GNU General Public License
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8 as published by the Free Software Foundation; either version 2
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9 of the License, or (at your option) any later version.
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11 This program is distributed in the hope that it will be useful,
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12 but WITHOUT ANY WARRANTY; without even the implied warranty of
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13 MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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14 GNU General Public License for more details.
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16 You should have received a copy of the GNU General Public License
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17 along with this program; if not, write to the Free Software
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18 Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
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21 <!-- edited with XMLSpy v2006 sp1 U (http://www.altova.com) by ioh[ (o[ih[oh) -->
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22 <xs:schema xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:vamsas="www.vamsas.org" targetNamespace="www.vamsas.org" elementFormDefault="qualified" attributeFormDefault="unqualified">
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23 <xs:complexType name="VAMSAS">
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25 <xs:element name="Alignment" minOccurs="0" maxOccurs="unbounded">
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28 <xs:element name="Annotation" minOccurs="0">
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31 <xs:element ref="vamsas:annotationElement" maxOccurs="unbounded"/>
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32 <xs:element name="label" type="xs:string"/>
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33 <xs:element name="description" type="xs:string"/>
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35 <xs:attribute name="graph" type="xs:boolean" use="required"/>
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36 <xs:attribute name="graphType" type="xs:int" use="optional"/>
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39 <xs:element ref="vamsas:SequenceSet"/>
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43 <xs:element name="Tree" type="xs:string" minOccurs="0" maxOccurs="unbounded"/>
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44 <xs:element ref="vamsas:SequenceSet" minOccurs="0" maxOccurs="unbounded"/>
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47 <xs:element name="SequenceSet">
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50 <xs:element name="Sequence" type="vamsas:SequenceType" maxOccurs="unbounded"/>
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51 <xs:element name="Annotation" minOccurs="0" maxOccurs="unbounded">
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54 <xs:element name="description" type="xs:string" minOccurs="0"/>
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55 <xs:element name="status" type="xs:string" minOccurs="0"/>
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56 <xs:element ref="vamsas:annotationElement" minOccurs="0" maxOccurs="unbounded"/>
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58 <xs:attribute name="type" type="xs:string" use="required"/>
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59 <xs:attribute name="end" type="xs:string" use="required"/>
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60 <xs:attribute name="begin" type="xs:string" use="required"/>
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61 <xs:attribute name="seqRef" type="xs:string" use="required"/>
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65 <xs:attribute name="gapChar" type="xs:string" use="required"/>
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66 <xs:attribute name="aligned" type="xs:boolean" use="optional"/>
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69 <xs:element name="annotationElement">
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72 <xs:element name="displayCharacter" type="xs:string"/>
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73 <xs:element name="description" type="xs:string"/>
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74 <xs:element name="secondaryStructure">
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76 <xs:restriction base="xs:string">
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77 <xs:length value="1"/>
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81 <xs:element name="value" type="xs:float"/>
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83 <xs:attribute name="position" type="xs:int" use="required"/>
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86 <xs:complexType name="SequenceType">
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88 <xs:element name="sequence" type="xs:string"/>
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89 <xs:element name="name" type="xs:string"/>
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91 <xs:attribute name="id" type="xs:string"/>
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