1 <?xml version="1.0" encoding="UTF-8"?>
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3 * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)
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4 * Copyright (C) 2011 J Procter, AM Waterhouse, J Engelhardt, LM Lui, G Barton, M Clamp, S Searle
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6 * This file is part of Jalview.
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8 * Jalview is free software: you can redistribute it and/or
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9 * modify it under the terms of the GNU General Public License
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10 * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
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12 * Jalview is distributed in the hope that it will be useful, but
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13 * WITHOUT ANY WARRANTY; without even the implied warranty
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14 * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
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15 * PURPOSE. See the GNU General Public License for more details.
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17 * You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
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19 <!-- edited with XMLSpy v2006 sp1 U (http://www.altova.com) by ioh[ (o[ih[oh) -->
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20 <xs:schema xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:vamsas="www.vamsas.org" targetNamespace="www.vamsas.org" elementFormDefault="qualified" attributeFormDefault="unqualified">
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21 <xs:complexType name="VAMSAS">
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23 <xs:element name="Alignment" minOccurs="0" maxOccurs="unbounded">
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26 <xs:element name="Annotation" minOccurs="0">
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29 <xs:element ref="vamsas:annotationElement" maxOccurs="unbounded"/>
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30 <xs:element name="label" type="xs:string"/>
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31 <xs:element name="description" type="xs:string"/>
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33 <xs:attribute name="graph" type="xs:boolean" use="required"/>
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34 <xs:attribute name="graphType" type="xs:int" use="optional"/>
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37 <xs:element ref="vamsas:SequenceSet"/>
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41 <xs:element name="Tree" type="xs:string" minOccurs="0" maxOccurs="unbounded"/>
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42 <xs:element ref="vamsas:SequenceSet" minOccurs="0" maxOccurs="unbounded"/>
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45 <xs:element name="SequenceSet">
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48 <xs:element name="Sequence" type="vamsas:SequenceType" maxOccurs="unbounded"/>
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49 <xs:element name="Annotation" minOccurs="0" maxOccurs="unbounded">
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52 <xs:element name="description" type="xs:string" minOccurs="0"/>
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53 <xs:element name="status" type="xs:string" minOccurs="0"/>
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54 <xs:element ref="vamsas:annotationElement" minOccurs="0" maxOccurs="unbounded"/>
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56 <xs:attribute name="type" type="xs:string" use="required"/>
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57 <xs:attribute name="end" type="xs:string" use="required"/>
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58 <xs:attribute name="begin" type="xs:string" use="required"/>
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59 <xs:attribute name="seqRef" type="xs:string" use="required"/>
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63 <xs:attribute name="gapChar" type="xs:string" use="required"/>
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64 <xs:attribute name="aligned" type="xs:boolean" use="optional"/>
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67 <xs:element name="annotationElement">
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70 <xs:element name="displayCharacter" type="xs:string"/>
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71 <xs:element name="description" type="xs:string"/>
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72 <xs:element name="secondaryStructure">
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74 <xs:restriction base="xs:string">
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75 <xs:length value="1"/>
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79 <xs:element name="value" type="xs:float"/>
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81 <xs:attribute name="position" type="xs:int" use="required"/>
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84 <xs:complexType name="SequenceType">
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86 <xs:element name="sequence" type="xs:string"/>
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87 <xs:element name="name" type="xs:string"/>
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89 <xs:attribute name="id" type="xs:string"/>
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