1 <?xml version="1.0" encoding="UTF-8"?>
3 * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
4 * Copyright (C) $$Year-Rel$$ The Jalview Authors
6 * This file is part of Jalview.
8 * Jalview is free software: you can redistribute it and/or
9 * modify it under the terms of the GNU General Public License
10 * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
12 * Jalview is distributed in the hope that it will be useful, but
13 * WITHOUT ANY WARRANTY; without even the implied warranty
14 * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15 * PURPOSE. See the GNU General Public License for more details.
17 * You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
18 * The Jalview Authors are detailed in the 'AUTHORS' file.
20 <!-- edited with XMLSpy v2006 sp1 U (http://www.altova.com) by ioh[ (o[ih[oh) -->
21 <xs:schema xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:vamsas="www.vamsas.org" targetNamespace="www.vamsas.org" elementFormDefault="qualified" attributeFormDefault="unqualified">
22 <xs:complexType name="VAMSAS">
24 <xs:element name="Alignment" minOccurs="0" maxOccurs="unbounded">
27 <xs:element name="Annotation" minOccurs="0">
30 <xs:element ref="vamsas:annotationElement" maxOccurs="unbounded"/>
31 <xs:element name="label" type="xs:string"/>
32 <xs:element name="description" type="xs:string"/>
34 <xs:attribute name="graph" type="xs:boolean" use="required"/>
35 <xs:attribute name="graphType" type="xs:int" use="optional"/>
38 <xs:element ref="vamsas:SequenceSet"/>
42 <xs:element name="Tree" type="xs:string" minOccurs="0" maxOccurs="unbounded"/>
43 <xs:element ref="vamsas:SequenceSet" minOccurs="0" maxOccurs="unbounded"/>
46 <xs:element name="SequenceSet">
49 <xs:element name="Sequence" type="vamsas:SequenceType" maxOccurs="unbounded"/>
50 <xs:element name="Annotation" minOccurs="0" maxOccurs="unbounded">
53 <xs:element name="description" type="xs:string" minOccurs="0"/>
54 <xs:element name="status" type="xs:string" minOccurs="0"/>
55 <xs:element ref="vamsas:annotationElement" minOccurs="0" maxOccurs="unbounded"/>
57 <xs:attribute name="type" type="xs:string" use="required"/>
58 <xs:attribute name="end" type="xs:string" use="required"/>
59 <xs:attribute name="begin" type="xs:string" use="required"/>
60 <xs:attribute name="seqRef" type="xs:string" use="required"/>
64 <xs:attribute name="gapChar" type="xs:string" use="required"/>
65 <xs:attribute name="aligned" type="xs:boolean" use="optional"/>
68 <xs:element name="annotationElement">
71 <xs:element name="displayCharacter" type="xs:string"/>
72 <xs:element name="description" type="xs:string"/>
73 <xs:element name="secondaryStructure">
75 <xs:restriction base="xs:string">
76 <xs:length value="1"/>
80 <xs:element name="value" type="xs:float"/>
82 <xs:attribute name="position" type="xs:int" use="required"/>
85 <xs:complexType name="SequenceType">
87 <xs:element name="sequence" type="xs:string"/>
88 <xs:element name="name" type="xs:string"/>
90 <xs:attribute name="id" type="xs:string"/>