schemas/vamsasJvV1.xsd

   1 <?xml version="1.0" encoding="UTF-8"?>
   2 <!--
   3  * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   4  * Copyright (C) 2014 The Jalview Authors
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   7  *
   8  * Jalview is free software: you can redistribute it and/or
   9  * modify it under the terms of the GNU General Public License
  10  * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
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  19 -->
  20 <!-- edited with XMLSpy v2006 sp1 U (http://www.altova.com) by ioh[ (o[ih[oh) -->
  21 <xs:schema xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:vamsas="www.vamsas.org" targetNamespace="www.vamsas.org" elementFormDefault="qualified" attributeFormDefault="unqualified">
  22         <xs:complexType name="VAMSAS">
  23                 <xs:sequence>
  24                         <xs:element name="Alignment" minOccurs="0" maxOccurs="unbounded">
  25                                 <xs:complexType>
  26                                         <xs:sequence>
  27                                                 <xs:element name="Annotation" minOccurs="0">
  28                                                         <xs:complexType>
  29                                                                 <xs:sequence>
  30                                                                         <xs:element ref="vamsas:annotationElement" maxOccurs="unbounded"/>
  31                                                                         <xs:element name="label" type="xs:string"/>
  32                                                                         <xs:element name="description" type="xs:string"/>
  33                                                                 </xs:sequence>
  34                                                                 <xs:attribute name="graph" type="xs:boolean" use="required"/>
  35                                                                 <xs:attribute name="graphType" type="xs:int" use="optional"/>
  36                                                         </xs:complexType>
  37                                                 </xs:element>
  38                                                 <xs:element ref="vamsas:SequenceSet"/>
  39                                         </xs:sequence>
  40                                 </xs:complexType>
  41                         </xs:element>
  42                         <xs:element name="Tree" type="xs:string" minOccurs="0" maxOccurs="unbounded"/>
  43                         <xs:element ref="vamsas:SequenceSet" minOccurs="0" maxOccurs="unbounded"/>
  44                 </xs:sequence>
  45         </xs:complexType>
  46         <xs:element name="SequenceSet">
  47                 <xs:complexType>
  48                         <xs:sequence>
  49                                 <xs:element name="Sequence" type="vamsas:SequenceType" maxOccurs="unbounded"/>
  50                                 <xs:element name="Annotation" minOccurs="0" maxOccurs="unbounded">
  51                                         <xs:complexType>
  52                                                 <xs:sequence>
  53                                                         <xs:element name="description" type="xs:string" minOccurs="0"/>
  54                                                         <xs:element name="status" type="xs:string" minOccurs="0"/>
  55                                                         <xs:element ref="vamsas:annotationElement" minOccurs="0" maxOccurs="unbounded"/>
  56                                                 </xs:sequence>
  57                                                 <xs:attribute name="type" type="xs:string" use="required"/>
  58                                                 <xs:attribute name="end" type="xs:string" use="required"/>
  59                                                 <xs:attribute name="begin" type="xs:string" use="required"/>
  60                                                 <xs:attribute name="seqRef" type="xs:string" use="required"/>
  61                                         </xs:complexType>
  62                                 </xs:element>
  63                         </xs:sequence>
  64                         <xs:attribute name="gapChar" type="xs:string" use="required"/>
  65                         <xs:attribute name="aligned" type="xs:boolean" use="optional"/>
  66                 </xs:complexType>
  67         </xs:element>
  68         <xs:element name="annotationElement">
  69                 <xs:complexType>
  70                         <xs:sequence>
  71                                 <xs:element name="displayCharacter" type="xs:string"/>
  72                                 <xs:element name="description" type="xs:string"/>
  73                                 <xs:element name="secondaryStructure">
  74                                         <xs:simpleType>
  75                                                 <xs:restriction base="xs:string">
  76                                                         <xs:length value="1"/>
  77                                                 </xs:restriction>
  78                                         </xs:simpleType>
  79                                 </xs:element>
  80                                 <xs:element name="value" type="xs:float"/>
  81                         </xs:sequence>
  82                         <xs:attribute name="position" type="xs:int" use="required"/>
  83                 </xs:complexType>
  84         </xs:element>
  85         <xs:complexType name="SequenceType">
  86                 <xs:sequence>
  87                         <xs:element name="sequence" type="xs:string"/>
  88                         <xs:element name="name" type="xs:string"/>
  89                 </xs:sequence>
  90                 <xs:attribute name="id" type="xs:string"/>
  91         </xs:complexType>
  92 </xs:schema>