3 * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
4 * Copyright (C) 2015 The Jalview Authors
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20 * The Jalview Authors are detailed in the 'AUTHORS' file.
23 <title>Mapping Between Different Sequences</title>
27 <strong>Mapping Between Different Sequences</strong>
29 <p>A new feature in Jalview 2.3 is the ability to map between
30 sequences in different domains, based on alignment, or by the use of
31 explicit mappings provided by databases.</p>
33 The most familiar mapping is the one used to identify the
34 coordinates corresponding to a displayed sequence when viewing a PDB
35 file associated with a sequence (see <a href="viewingpdbs.html">"Viewing
36 PDB Files"</a> for more information.
39 The newest form of mapping supported by Jalview is the
40 correspondence between DNA and protein sequences. This mapping can
41 be imported directly from EMBL and EMBLCDS database records
42 retrieved by the <a href="seqfetch.html">Sequence Fetcher</a>, and
43 allows sequence features to be mapped directly from Uniprot das
44 sources to their coding region on EMBL sequence records.