5 import java.awt.event.*;
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6 import jalview.datamodel.*;
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7 import jalview.appletgui.*;
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8 import java.awt.event.ActionListener;
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9 import java.awt.event.ActionEvent;
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12 public class AppletPDBViewer extends Frame
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16 AppletPDBCanvas pdbcanvas;
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19 public AppletPDBViewer(String pdbtext,String type,
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21 SeqCanvas seqcanvas)
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29 catch (Exception ex)
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31 ex.printStackTrace();
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34 pdbcanvas = new AppletPDBCanvas(seqcanvas, seq);
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36 add(pdbcanvas, BorderLayout.CENTER);
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38 StringBuffer title = new StringBuffer(sequence.getName() + ":");
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40 jalview.bin.JalviewLite.addFrame(this,title.toString(),400, 400);
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43 PDBfile pdbfile = new PDBfile(pdbtext, type);
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44 pdbcanvas.setPDBFile(pdbfile);
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46 catch(Exception ex){
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47 pdbcanvas.errorLoading = true;
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48 pdbcanvas.repaint();
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53 private void jbInit()
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56 this.setMenuBar(jMenuBar1);
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57 fileMenu.setLabel("File");
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58 coloursMenu.setLabel("Colours");
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59 mapping.setLabel("View Mapping");
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60 mapping.addActionListener(new ActionListener()
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62 public void actionPerformed(ActionEvent e)
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64 mapping_actionPerformed();
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67 wire.setLabel("Wireframe");
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68 wire.addItemListener(new ItemListener()
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70 public void itemStateChanged(ItemEvent e)
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72 wire_actionPerformed();
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75 depth.setState(true);
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76 depth.setLabel("Depthcue");
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77 depth.addItemListener(new ItemListener()
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79 public void itemStateChanged(ItemEvent e)
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81 depth_actionPerformed();
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84 zbuffer.setState(true);
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85 zbuffer.setLabel("Z Buffering");
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86 zbuffer.addItemListener(new ItemListener()
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88 public void itemStateChanged(ItemEvent e)
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90 zbuffer_actionPerformed();
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93 charge.setLabel("Charge & Cysteine");
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94 charge.addActionListener(new ActionListener()
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96 public void actionPerformed(ActionEvent e)
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98 charge_actionPerformed();
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101 hydro.setLabel("Hydrophobicity");
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102 hydro.addActionListener(new ActionListener()
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104 public void actionPerformed(ActionEvent e)
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106 hydro_actionPerformed();
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109 chain.setLabel("By Chain");
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110 chain.addActionListener(new ActionListener()
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112 public void actionPerformed(ActionEvent e)
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114 chain_actionPerformed();
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117 seqButton.setLabel("By Sequence");
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118 seqButton.addActionListener(new ActionListener()
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120 public void actionPerformed(ActionEvent e){
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121 seqButton_actionPerformed();
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124 allchains.setLabel("All Chains Visible");
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125 allchains.addItemListener(new ItemListener()
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127 public void itemStateChanged(ItemEvent itemEvent)
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129 allchains_itemStateChanged(itemEvent);
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132 jMenuBar1.add(fileMenu);
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133 jMenuBar1.add(coloursMenu);
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134 fileMenu.add(mapping);;
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136 coloursMenu.add(seqButton);
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137 coloursMenu.add(chain);
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138 coloursMenu.add(hydro);
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139 coloursMenu.add(charge);
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140 coloursMenu.addSeparator();
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141 coloursMenu.add(wire);
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142 coloursMenu.add(depth);
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143 coloursMenu.add(zbuffer);
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144 coloursMenu.add(allchains);
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145 allchains.setState(true);
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148 MenuBar jMenuBar1 = new MenuBar();
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149 Menu fileMenu = new Menu();
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150 Menu coloursMenu = new Menu();
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151 MenuItem mapping = new MenuItem();
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152 CheckboxGroup bg = new CheckboxGroup();
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153 CheckboxMenuItem wire = new CheckboxMenuItem();
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154 CheckboxMenuItem depth = new CheckboxMenuItem();
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155 CheckboxMenuItem zbuffer = new CheckboxMenuItem();
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157 MenuItem charge = new MenuItem();
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158 MenuItem hydro = new MenuItem();
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159 MenuItem chain = new MenuItem();
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160 MenuItem seqButton = new MenuItem();
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162 CheckboxMenuItem allchains = new CheckboxMenuItem();
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164 public void charge_actionPerformed()
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166 clearButtonGroup();
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167 pdbcanvas.pdb.setChargeColours();
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168 pdbcanvas.redrawneeded=true;
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169 pdbcanvas.repaint();
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172 public void hydro_actionPerformed()
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174 clearButtonGroup();
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175 pdbcanvas.pdb.setHydrophobicityColours();
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176 pdbcanvas.redrawneeded=true;
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177 pdbcanvas.repaint();
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180 public void chain_actionPerformed()
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182 clearButtonGroup();
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183 pdbcanvas.pdb.setChainColours();
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184 pdbcanvas.redrawneeded=true;
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185 pdbcanvas.repaint();
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188 public void zbuffer_actionPerformed()
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190 pdbcanvas.zbuffer = ! pdbcanvas.zbuffer;
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191 pdbcanvas.redrawneeded=true;
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192 pdbcanvas.repaint();
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195 public void depth_actionPerformed()
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197 pdbcanvas.depthcue = ! pdbcanvas.depthcue;
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198 pdbcanvas.redrawneeded=true;
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199 pdbcanvas.repaint();
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202 public void wire_actionPerformed()
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204 pdbcanvas.wire = ! pdbcanvas.wire;
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205 pdbcanvas.redrawneeded=true;
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206 pdbcanvas.repaint();
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209 public void seqButton_actionPerformed()
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211 clearButtonGroup();
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212 pdbcanvas.bysequence = true;
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213 pdbcanvas.updateSeqColours();
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214 pdbcanvas.repaint();
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217 void clearButtonGroup()
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219 pdbcanvas.bysequence = false;
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220 pdbcanvas.bymolecule = false;
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223 public void mapping_actionPerformed()
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225 jalview.appletgui.CutAndPasteTransfer cap
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226 = new jalview.appletgui.CutAndPasteTransfer(false, null);
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227 Frame frame = new Frame();
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229 jalview.bin.JalviewLite.addFrame(frame, "PDB - Sequence Mapping", 500, 600);
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230 cap.setText(pdbcanvas.mappingDetails.toString());
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233 public void allchains_itemStateChanged(ItemEvent itemEvent)
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235 pdbcanvas.setAllchainsVisible(allchains.getState());
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