2 * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3 * Copyright (C) $$Year-Rel$$ The Jalview Authors
5 * This file is part of Jalview.
7 * Jalview is free software: you can redistribute it and/or
8 * modify it under the terms of the GNU General Public License
9 * as published by the Free Software Foundation, either version 3
10 * of the License, or (at your option) any later version.
12 * Jalview is distributed in the hope that it will be useful, but
13 * WITHOUT ANY WARRANTY; without even the implied warranty
14 * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15 * PURPOSE. See the GNU General Public License for more details.
17 * You should have received a copy of the GNU General Public License
18 * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19 * The Jalview Authors are detailed in the 'AUTHORS' file.
23 public class JpredSoapBindingStub extends org.apache.axis.client.Stub
24 implements ext.vamsas.Jpred
26 private java.util.Vector cachedSerClasses = new java.util.Vector();
28 private java.util.Vector cachedSerQNames = new java.util.Vector();
30 private java.util.Vector cachedSerFactories = new java.util.Vector();
32 private java.util.Vector cachedDeserFactories = new java.util.Vector();
34 static org.apache.axis.description.OperationDesc[] _operations;
38 _operations = new org.apache.axis.description.OperationDesc[4];
39 _initOperationDesc1();
42 private static void _initOperationDesc1()
44 org.apache.axis.description.OperationDesc oper;
45 oper = new org.apache.axis.description.OperationDesc();
46 oper.setName("predict");
47 oper.addParameter(new javax.xml.namespace.QName("", "seq"),
48 new javax.xml.namespace.QName("simple.objects.vamsas",
50 vamsas.objects.simple.Sequence.class,
51 org.apache.axis.description.ParameterDesc.IN, false, false);
52 oper.setReturnType(new javax.xml.namespace.QName(
53 "http://www.w3.org/2001/XMLSchema", "string"));
54 oper.setReturnClass(java.lang.String.class);
55 oper.setReturnQName(new javax.xml.namespace.QName("", "predictReturn"));
56 oper.setStyle(org.apache.axis.constants.Style.RPC);
57 oper.setUse(org.apache.axis.constants.Use.ENCODED);
58 _operations[0] = oper;
60 oper = new org.apache.axis.description.OperationDesc();
61 oper.setName("predictOnMsa");
62 oper.addParameter(new javax.xml.namespace.QName("", "msf"),
63 new javax.xml.namespace.QName("http://simple.objects.vamsas",
65 vamsas.objects.simple.Msfalignment.class,
66 org.apache.axis.description.ParameterDesc.IN, false, false);
67 oper.setReturnType(new javax.xml.namespace.QName(
68 "http://www.w3.org/2001/XMLSchema", "string"));
69 oper.setReturnClass(java.lang.String.class);
71 new javax.xml.namespace.QName("", "predictOnMsaReturn"));
72 oper.setStyle(org.apache.axis.constants.Style.RPC);
73 oper.setUse(org.apache.axis.constants.Use.ENCODED);
74 _operations[1] = oper;
76 oper = new org.apache.axis.description.OperationDesc();
77 oper.setName("getpredict");
78 oper.addParameter(new javax.xml.namespace.QName("", "job_id"),
79 new javax.xml.namespace.QName(
80 "http://www.w3.org/2001/XMLSchema", "string"),
81 java.lang.String.class,
82 org.apache.axis.description.ParameterDesc.IN, false, false);
83 oper.setReturnType(new javax.xml.namespace.QName(
84 "http://simple.objects.vamsas", "Secstructpred"));
85 oper.setReturnClass(vamsas.objects.simple.Secstructpred.class);
87 new javax.xml.namespace.QName("", "getpredictReturn"));
88 oper.setStyle(org.apache.axis.constants.Style.RPC);
89 oper.setUse(org.apache.axis.constants.Use.ENCODED);
90 _operations[2] = oper;
92 oper = new org.apache.axis.description.OperationDesc();
93 oper.setName("getresult");
94 oper.addParameter(new javax.xml.namespace.QName("", "job_id"),
95 new javax.xml.namespace.QName(
96 "http://www.w3.org/2001/XMLSchema", "string"),
97 java.lang.String.class,
98 org.apache.axis.description.ParameterDesc.IN, false, false);
99 oper.setReturnType(new javax.xml.namespace.QName(
100 "http://simple.objects.vamsas", "JpredResult"));
101 oper.setReturnClass(vamsas.objects.simple.JpredResult.class);
103 new javax.xml.namespace.QName("", "getresultReturn"));
104 oper.setStyle(org.apache.axis.constants.Style.RPC);
105 oper.setUse(org.apache.axis.constants.Use.ENCODED);
106 _operations[3] = oper;
110 public JpredSoapBindingStub() throws org.apache.axis.AxisFault
115 public JpredSoapBindingStub(java.net.URL endpointURL,
116 javax.xml.rpc.Service service) throws org.apache.axis.AxisFault
119 super.cachedEndpoint = endpointURL;
122 public JpredSoapBindingStub(javax.xml.rpc.Service service)
123 throws org.apache.axis.AxisFault
127 super.service = new org.apache.axis.client.Service();
131 super.service = service;
134 javax.xml.namespace.QName qName;
135 java.lang.Class beansf = org.apache.axis.encoding.ser.BeanSerializerFactory.class;
136 java.lang.Class beandf = org.apache.axis.encoding.ser.BeanDeserializerFactory.class;
138 * java.lang.Class enumsf =
139 * org.apache.axis.encoding.ser.EnumSerializerFactory.class; java.lang.Class
140 * enumdf = org.apache.axis.encoding.ser.EnumDeserializerFactory.class;
141 * java.lang.Class arraysf =
142 * org.apache.axis.encoding.ser.ArraySerializerFactory.class;
143 * java.lang.Class arraydf =
144 * org.apache.axis.encoding.ser.ArrayDeserializerFactory.class;
145 * java.lang.Class simplesf =
146 * org.apache.axis.encoding.ser.SimpleSerializerFactory.class;
147 * java.lang.Class simpledf =
148 * org.apache.axis.encoding.ser.SimpleDeserializerFactory.class;
149 * java.lang.Class simplelistsf =
150 * org.apache.axis.encoding.ser.SimpleListSerializerFactory.class;
151 * java.lang.Class simplelistdf =
152 * org.apache.axis.encoding.ser.SimpleListDeserializerFactory.class;
154 qName = new javax.xml.namespace.QName("http://simple.objects.vamsas",
156 cachedSerQNames.add(qName);
157 cls = vamsas.objects.simple.JpredResult.class;
158 cachedSerClasses.add(cls);
159 cachedSerFactories.add(beansf);
160 cachedDeserFactories.add(beandf);
162 qName = new javax.xml.namespace.QName("simple.objects.vamsas",
164 cachedSerQNames.add(qName);
165 cls = vamsas.objects.simple.Result.class;
166 cachedSerClasses.add(cls);
167 cachedSerFactories.add(beansf);
168 cachedDeserFactories.add(beandf);
170 qName = new javax.xml.namespace.QName("http://simple.objects.vamsas",
172 cachedSerQNames.add(qName);
173 cls = vamsas.objects.simple.Secstructpred.class;
174 cachedSerClasses.add(cls);
175 cachedSerFactories.add(beansf);
176 cachedDeserFactories.add(beandf);
178 qName = new javax.xml.namespace.QName("http://simple.objects.vamsas",
180 cachedSerQNames.add(qName);
181 cls = vamsas.objects.simple.Msfalignment.class;
182 cachedSerClasses.add(cls);
183 cachedSerFactories.add(beansf);
184 cachedDeserFactories.add(beandf);
186 qName = new javax.xml.namespace.QName("simple.objects.vamsas",
188 cachedSerQNames.add(qName);
189 cls = vamsas.objects.simple.Sequence.class;
190 cachedSerClasses.add(cls);
191 cachedSerFactories.add(beansf);
192 cachedDeserFactories.add(beandf);
196 protected org.apache.axis.client.Call createCall()
197 throws java.rmi.RemoteException
201 org.apache.axis.client.Call _call = (org.apache.axis.client.Call) super.service
203 if (super.maintainSessionSet)
205 _call.setMaintainSession(super.maintainSession);
207 if (super.cachedUsername != null)
209 _call.setUsername(super.cachedUsername);
211 if (super.cachedPassword != null)
213 _call.setPassword(super.cachedPassword);
215 if (super.cachedEndpoint != null)
217 _call.setTargetEndpointAddress(super.cachedEndpoint);
219 if (super.cachedTimeout != null)
221 _call.setTimeout(super.cachedTimeout);
223 if (super.cachedPortName != null)
225 _call.setPortName(super.cachedPortName);
227 java.util.Enumeration keys = super.cachedProperties.keys();
228 while (keys.hasMoreElements())
230 java.lang.String key = (java.lang.String) keys.nextElement();
231 _call.setProperty(key, super.cachedProperties.get(key));
233 // All the type mapping information is registered
234 // when the first call is made.
235 // The type mapping information is actually registered in
236 // the TypeMappingRegistry of the service, which
237 // is the reason why registration is only needed for the first call.
242 // must set encoding style before registering serializers
243 _call.setSOAPVersion(
244 org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
245 _call.setEncodingStyle(org.apache.axis.Constants.URI_SOAP11_ENC);
246 for (int i = 0; i < cachedSerFactories.size(); ++i)
248 java.lang.Class cls = (java.lang.Class) cachedSerClasses.get(i);
249 javax.xml.namespace.QName qName = (javax.xml.namespace.QName) cachedSerQNames
251 java.lang.Class sf = (java.lang.Class) cachedSerFactories
253 java.lang.Class df = (java.lang.Class) cachedDeserFactories
255 _call.registerTypeMapping(cls, qName, sf, df, false);
260 } catch (java.lang.Throwable _t)
262 throw new org.apache.axis.AxisFault(
263 "Failure trying to get the Call object", _t);
267 public java.lang.String predict(vamsas.objects.simple.Sequence seq)
268 throws java.rmi.RemoteException
270 if (super.cachedEndpoint == null)
272 throw new org.apache.axis.NoEndPointException();
274 org.apache.axis.client.Call _call = createCall();
275 _call.setOperation(_operations[0]);
276 _call.setUseSOAPAction(true);
277 _call.setSOAPActionURI("");
278 _call.setSOAPVersion(
279 org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
280 _call.setOperationName(
281 new javax.xml.namespace.QName("vamsas", "predict"));
283 setRequestHeaders(_call);
284 setAttachments(_call);
285 java.lang.Object _resp = _call.invoke(new java.lang.Object[] { seq });
287 if (_resp instanceof java.rmi.RemoteException)
289 throw (java.rmi.RemoteException) _resp;
293 extractAttachments(_call);
296 return (java.lang.String) _resp;
297 } catch (java.lang.Exception _exception)
299 return (java.lang.String) org.apache.axis.utils.JavaUtils
300 .convert(_resp, java.lang.String.class);
305 public java.lang.String predictOnMsa(
306 vamsas.objects.simple.Msfalignment msf)
307 throws java.rmi.RemoteException
309 if (super.cachedEndpoint == null)
311 throw new org.apache.axis.NoEndPointException();
313 org.apache.axis.client.Call _call = createCall();
314 _call.setOperation(_operations[1]);
315 _call.setUseSOAPAction(true);
316 _call.setSOAPActionURI("");
317 _call.setSOAPVersion(
318 org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
319 _call.setOperationName(
320 new javax.xml.namespace.QName("vamsas", "predictOnMsa"));
322 setRequestHeaders(_call);
323 setAttachments(_call);
324 java.lang.Object _resp = _call.invoke(new java.lang.Object[] { msf });
326 if (_resp instanceof java.rmi.RemoteException)
328 throw (java.rmi.RemoteException) _resp;
332 extractAttachments(_call);
335 return (java.lang.String) _resp;
336 } catch (java.lang.Exception _exception)
338 return (java.lang.String) org.apache.axis.utils.JavaUtils
339 .convert(_resp, java.lang.String.class);
344 public vamsas.objects.simple.Secstructpred getpredict(
345 java.lang.String job_id) throws java.rmi.RemoteException
347 if (super.cachedEndpoint == null)
349 throw new org.apache.axis.NoEndPointException();
351 org.apache.axis.client.Call _call = createCall();
352 _call.setOperation(_operations[2]);
353 _call.setUseSOAPAction(true);
354 _call.setSOAPActionURI("");
355 _call.setSOAPVersion(
356 org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
357 _call.setOperationName(
358 new javax.xml.namespace.QName("vamsas", "getpredict"));
360 setRequestHeaders(_call);
361 setAttachments(_call);
362 java.lang.Object _resp = _call
363 .invoke(new java.lang.Object[]
366 if (_resp instanceof java.rmi.RemoteException)
368 throw (java.rmi.RemoteException) _resp;
372 extractAttachments(_call);
375 return (vamsas.objects.simple.Secstructpred) _resp;
376 } catch (java.lang.Exception _exception)
378 return (vamsas.objects.simple.Secstructpred) org.apache.axis.utils.JavaUtils
379 .convert(_resp, vamsas.objects.simple.Secstructpred.class);
384 public vamsas.objects.simple.JpredResult getresult(
385 java.lang.String job_id) throws java.rmi.RemoteException
387 if (super.cachedEndpoint == null)
389 throw new org.apache.axis.NoEndPointException();
391 org.apache.axis.client.Call _call = createCall();
392 _call.setOperation(_operations[3]);
393 _call.setUseSOAPAction(true);
394 _call.setSOAPActionURI("");
395 _call.setSOAPVersion(
396 org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
397 _call.setOperationName(
398 new javax.xml.namespace.QName("vamsas", "getresult"));
400 setRequestHeaders(_call);
401 setAttachments(_call);
402 java.lang.Object _resp = _call
403 .invoke(new java.lang.Object[]
406 if (_resp instanceof java.rmi.RemoteException)
408 throw (java.rmi.RemoteException) _resp;
412 extractAttachments(_call);
415 return (vamsas.objects.simple.JpredResult) _resp;
416 } catch (java.lang.Exception _exception)
418 return (vamsas.objects.simple.JpredResult) org.apache.axis.utils.JavaUtils
419 .convert(_resp, vamsas.objects.simple.JpredResult.class);