2 * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
3 * Copyright (C) 2014 The Jalview Authors
5 * This file is part of Jalview.
7 * Jalview is free software: you can redistribute it and/or
8 * modify it under the terms of the GNU General Public License
9 * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
11 * Jalview is distributed in the hope that it will be useful, but
12 * WITHOUT ANY WARRANTY; without even the implied warranty
13 * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
14 * PURPOSE. See the GNU General Public License for more details.
16 * You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
17 * The Jalview Authors are detailed in the 'AUTHORS' file.
21 public interface MuscleWS extends java.rmi.Remote
23 public vamsas.objects.simple.WsJobId align(
24 vamsas.objects.simple.SequenceSet seqSet)
25 throws java.rmi.RemoteException;
27 public vamsas.objects.simple.Alignment getalign(java.lang.String job_id)
28 throws java.rmi.RemoteException;
30 public vamsas.objects.simple.MsaResult getResult(java.lang.String job_id)
31 throws java.rmi.RemoteException;
33 public vamsas.objects.simple.WsJobId cancel(java.lang.String jobId)
34 throws java.rmi.RemoteException;