2 * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3 * Copyright (C) $$Year-Rel$$ The Jalview Authors
5 * This file is part of Jalview.
7 * Jalview is free software: you can redistribute it and/or
8 * modify it under the terms of the GNU General Public License
9 * as published by the Free Software Foundation, either version 3
10 * of the License, or (at your option) any later version.
12 * Jalview is distributed in the hope that it will be useful, but
13 * WITHOUT ANY WARRANTY; without even the implied warranty
14 * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15 * PURPOSE. See the GNU General Public License for more details.
17 * You should have received a copy of the GNU General Public License
18 * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19 * The Jalview Authors are detailed in the 'AUTHORS' file.
23 public class MuscleWSSoapBindingStub extends org.apache.axis.client.Stub
24 implements ext.vamsas.MuscleWS
26 static org.apache.axis.description.OperationDesc[] _operations;
30 _operations = new org.apache.axis.description.OperationDesc[4];
31 _initOperationDesc1();
34 private java.util.Vector cachedSerClasses = new java.util.Vector();
36 private java.util.Vector cachedSerQNames = new java.util.Vector();
38 private java.util.Vector cachedSerFactories = new java.util.Vector();
40 private java.util.Vector cachedDeserFactories = new java.util.Vector();
42 public MuscleWSSoapBindingStub() throws org.apache.axis.AxisFault
47 public MuscleWSSoapBindingStub(java.net.URL endpointURL,
48 javax.xml.rpc.Service service) throws org.apache.axis.AxisFault
51 super.cachedEndpoint = endpointURL;
54 public MuscleWSSoapBindingStub(javax.xml.rpc.Service service)
55 throws org.apache.axis.AxisFault
59 super.service = new org.apache.axis.client.Service();
63 super.service = service;
67 javax.xml.namespace.QName qName;
68 java.lang.Class beansf = org.apache.axis.encoding.ser.BeanSerializerFactory.class;
69 java.lang.Class beandf = org.apache.axis.encoding.ser.BeanDeserializerFactory.class;
70 // java.lang.Class enumsf =
71 // org.apache.axis.encoding.ser.EnumSerializerFactory.class;
72 // java.lang.Class enumdf =
73 // org.apache.axis.encoding.ser.EnumDeserializerFactory.class;
74 java.lang.Class arraysf = org.apache.axis.encoding.ser.ArraySerializerFactory.class;
75 java.lang.Class arraydf = org.apache.axis.encoding.ser.ArrayDeserializerFactory.class;
76 // java.lang.Class simplesf =
77 // org.apache.axis.encoding.ser.SimpleSerializerFactory.class;
78 // java.lang.Class simpledf =
79 // org.apache.axis.encoding.ser.SimpleDeserializerFactory.class;
80 // java.lang.Class simplelistsf =
81 // org.apache.axis.encoding.ser.SimpleListSerializerFactory.class;
82 // java.lang.Class simplelistdf =
83 // org.apache.axis.encoding.ser.SimpleListDeserializerFactory.class;
84 qName = new javax.xml.namespace.QName("simple.objects.vamsas",
86 cachedSerQNames.add(qName);
87 cls = vamsas.objects.simple.Sequence.class;
88 cachedSerClasses.add(cls);
89 cachedSerFactories.add(beansf);
90 cachedDeserFactories.add(beandf);
92 qName = new javax.xml.namespace.QName("vamsas",
93 "ArrayOf_tns1_Sequence");
94 cachedSerQNames.add(qName);
95 cls = vamsas.objects.simple.Sequence[].class;
96 cachedSerClasses.add(cls);
97 cachedSerFactories.add(arraysf);
98 cachedDeserFactories.add(arraydf);
100 qName = new javax.xml.namespace.QName("simple.objects.vamsas",
102 cachedSerQNames.add(qName);
103 cls = vamsas.objects.simple.MsaResult.class;
104 cachedSerClasses.add(cls);
105 cachedSerFactories.add(beansf);
106 cachedDeserFactories.add(beandf);
108 qName = new javax.xml.namespace.QName("simple.objects.vamsas",
110 cachedSerQNames.add(qName);
111 cls = vamsas.objects.simple.SequenceSet.class;
112 cachedSerClasses.add(cls);
113 cachedSerFactories.add(beansf);
114 cachedDeserFactories.add(beandf);
116 qName = new javax.xml.namespace.QName("http://simple.objects.vamsas",
118 cachedSerQNames.add(qName);
119 cls = vamsas.objects.simple.Object.class;
120 cachedSerClasses.add(cls);
121 cachedSerFactories.add(beansf);
122 cachedDeserFactories.add(beandf);
124 qName = new javax.xml.namespace.QName("simple.objects.vamsas",
126 cachedSerQNames.add(qName);
127 cls = vamsas.objects.simple.Alignment.class;
128 cachedSerClasses.add(cls);
129 cachedSerFactories.add(beansf);
130 cachedDeserFactories.add(beandf);
132 qName = new javax.xml.namespace.QName("simple.objects.vamsas",
134 cachedSerQNames.add(qName);
135 cls = vamsas.objects.simple.WsJobId.class;
136 cachedSerClasses.add(cls);
137 cachedSerFactories.add(beansf);
138 cachedDeserFactories.add(beandf);
140 qName = new javax.xml.namespace.QName("vamsas", "ArrayOf_xsd_string");
141 cachedSerQNames.add(qName);
142 cls = java.lang.String[].class;
143 cachedSerClasses.add(cls);
144 cachedSerFactories.add(arraysf);
145 cachedDeserFactories.add(arraydf);
147 qName = new javax.xml.namespace.QName("simple.objects.vamsas",
149 cachedSerQNames.add(qName);
150 cls = vamsas.objects.simple.Result.class;
151 cachedSerClasses.add(cls);
152 cachedSerFactories.add(beansf);
153 cachedDeserFactories.add(beandf);
156 private static void _initOperationDesc1()
158 org.apache.axis.description.OperationDesc oper;
159 oper = new org.apache.axis.description.OperationDesc();
160 oper.setName("align");
161 oper.addParameter(new javax.xml.namespace.QName("", "seqSet"),
162 new javax.xml.namespace.QName("simple.objects.vamsas",
164 vamsas.objects.simple.SequenceSet.class,
165 org.apache.axis.description.ParameterDesc.IN, false, false);
166 oper.setReturnType(new javax.xml.namespace.QName(
167 "simple.objects.vamsas", "WsJobId"));
168 oper.setReturnClass(vamsas.objects.simple.WsJobId.class);
169 oper.setReturnQName(new javax.xml.namespace.QName("", "alignReturn"));
170 oper.setStyle(org.apache.axis.constants.Style.RPC);
171 oper.setUse(org.apache.axis.constants.Use.ENCODED);
172 _operations[0] = oper;
174 oper = new org.apache.axis.description.OperationDesc();
175 oper.setName("getalign");
176 oper.addParameter(new javax.xml.namespace.QName("", "job_id"),
177 new javax.xml.namespace.QName(
178 "http://www.w3.org/2001/XMLSchema", "string"),
179 java.lang.String.class,
180 org.apache.axis.description.ParameterDesc.IN, false, false);
181 oper.setReturnType(new javax.xml.namespace.QName(
182 "simple.objects.vamsas", "Alignment"));
183 oper.setReturnClass(vamsas.objects.simple.Alignment.class);
185 new javax.xml.namespace.QName("", "getalignReturn"));
186 oper.setStyle(org.apache.axis.constants.Style.RPC);
187 oper.setUse(org.apache.axis.constants.Use.ENCODED);
188 _operations[1] = oper;
190 oper = new org.apache.axis.description.OperationDesc();
191 oper.setName("getResult");
192 oper.addParameter(new javax.xml.namespace.QName("", "job_id"),
193 new javax.xml.namespace.QName(
194 "http://www.w3.org/2001/XMLSchema", "string"),
195 java.lang.String.class,
196 org.apache.axis.description.ParameterDesc.IN, false, false);
197 oper.setReturnType(new javax.xml.namespace.QName(
198 "simple.objects.vamsas", "MsaResult"));
199 oper.setReturnClass(vamsas.objects.simple.MsaResult.class);
201 new javax.xml.namespace.QName("", "getResultReturn"));
202 oper.setStyle(org.apache.axis.constants.Style.RPC);
203 oper.setUse(org.apache.axis.constants.Use.ENCODED);
204 _operations[2] = oper;
206 oper = new org.apache.axis.description.OperationDesc();
207 oper.setName("cancel");
208 oper.addParameter(new javax.xml.namespace.QName("", "jobId"),
209 new javax.xml.namespace.QName(
210 "http://www.w3.org/2001/XMLSchema", "string"),
211 java.lang.String.class,
212 org.apache.axis.description.ParameterDesc.IN, false, false);
213 oper.setReturnType(new javax.xml.namespace.QName(
214 "simple.objects.vamsas", "WsJobId"));
215 oper.setReturnClass(vamsas.objects.simple.WsJobId.class);
216 oper.setReturnQName(new javax.xml.namespace.QName("", "cancelReturn"));
217 oper.setStyle(org.apache.axis.constants.Style.RPC);
218 oper.setUse(org.apache.axis.constants.Use.ENCODED);
219 _operations[3] = oper;
222 protected org.apache.axis.client.Call createCall()
223 throws java.rmi.RemoteException
227 org.apache.axis.client.Call _call = (org.apache.axis.client.Call) super.service
230 if (super.maintainSessionSet)
232 _call.setMaintainSession(super.maintainSession);
235 if (super.cachedUsername != null)
237 _call.setUsername(super.cachedUsername);
240 if (super.cachedPassword != null)
242 _call.setPassword(super.cachedPassword);
245 if (super.cachedEndpoint != null)
247 _call.setTargetEndpointAddress(super.cachedEndpoint);
250 if (super.cachedTimeout != null)
252 _call.setTimeout(super.cachedTimeout);
255 if (super.cachedPortName != null)
257 _call.setPortName(super.cachedPortName);
260 java.util.Enumeration keys = super.cachedProperties.keys();
262 while (keys.hasMoreElements())
264 java.lang.String key = (java.lang.String) keys.nextElement();
265 _call.setProperty(key, super.cachedProperties.get(key));
268 // All the type mapping information is registered
269 // when the first call is made.
270 // The type mapping information is actually registered in
271 // the TypeMappingRegistry of the service, which
272 // is the reason why registration is only needed for the first call.
277 // must set encoding style before registering serializers
278 _call.setSOAPVersion(
279 org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
280 _call.setEncodingStyle(org.apache.axis.Constants.URI_SOAP11_ENC);
282 for (int i = 0; i < cachedSerFactories.size(); ++i)
284 java.lang.Class cls = (java.lang.Class) cachedSerClasses.get(i);
285 javax.xml.namespace.QName qName = (javax.xml.namespace.QName) cachedSerQNames
287 java.lang.Class sf = (java.lang.Class) cachedSerFactories
289 java.lang.Class df = (java.lang.Class) cachedDeserFactories
291 _call.registerTypeMapping(cls, qName, sf, df, false);
297 } catch (java.lang.Throwable _t)
299 throw new org.apache.axis.AxisFault(
300 "Failure trying to get the Call object", _t);
304 public vamsas.objects.simple.WsJobId align(
305 vamsas.objects.simple.SequenceSet seqSet)
306 throws java.rmi.RemoteException
308 if (super.cachedEndpoint == null)
310 throw new org.apache.axis.NoEndPointException();
313 org.apache.axis.client.Call _call = createCall();
314 _call.setOperation(_operations[0]);
315 _call.setUseSOAPAction(true);
316 _call.setSOAPActionURI("");
317 _call.setSOAPVersion(
318 org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
319 _call.setOperationName(
320 new javax.xml.namespace.QName("vamsas", "align"));
322 setRequestHeaders(_call);
323 setAttachments(_call);
325 java.lang.Object _resp = _call
326 .invoke(new java.lang.Object[]
329 if (_resp instanceof java.rmi.RemoteException)
331 throw (java.rmi.RemoteException) _resp;
335 extractAttachments(_call);
339 return (vamsas.objects.simple.WsJobId) _resp;
340 } catch (java.lang.Exception _exception)
342 return (vamsas.objects.simple.WsJobId) org.apache.axis.utils.JavaUtils
343 .convert(_resp, vamsas.objects.simple.WsJobId.class);
348 public vamsas.objects.simple.Alignment getalign(java.lang.String job_id)
349 throws java.rmi.RemoteException
351 if (super.cachedEndpoint == null)
353 throw new org.apache.axis.NoEndPointException();
356 org.apache.axis.client.Call _call = createCall();
357 _call.setOperation(_operations[1]);
358 _call.setUseSOAPAction(true);
359 _call.setSOAPActionURI("");
360 _call.setSOAPVersion(
361 org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
362 _call.setOperationName(
363 new javax.xml.namespace.QName("vamsas", "getalign"));
365 setRequestHeaders(_call);
366 setAttachments(_call);
368 java.lang.Object _resp = _call
369 .invoke(new java.lang.Object[]
372 if (_resp instanceof java.rmi.RemoteException)
374 throw (java.rmi.RemoteException) _resp;
378 extractAttachments(_call);
382 return (vamsas.objects.simple.Alignment) _resp;
383 } catch (java.lang.Exception _exception)
385 return (vamsas.objects.simple.Alignment) org.apache.axis.utils.JavaUtils
386 .convert(_resp, vamsas.objects.simple.Alignment.class);
391 public vamsas.objects.simple.MsaResult getResult(java.lang.String job_id)
392 throws java.rmi.RemoteException
394 if (super.cachedEndpoint == null)
396 throw new org.apache.axis.NoEndPointException();
399 org.apache.axis.client.Call _call = createCall();
400 _call.setOperation(_operations[2]);
401 _call.setUseSOAPAction(true);
402 _call.setSOAPActionURI("");
403 _call.setSOAPVersion(
404 org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
405 _call.setOperationName(
406 new javax.xml.namespace.QName("vamsas", "getResult"));
408 setRequestHeaders(_call);
409 setAttachments(_call);
411 java.lang.Object _resp = _call
412 .invoke(new java.lang.Object[]
415 if (_resp instanceof java.rmi.RemoteException)
417 throw (java.rmi.RemoteException) _resp;
421 extractAttachments(_call);
425 return (vamsas.objects.simple.MsaResult) _resp;
426 } catch (java.lang.Exception _exception)
428 return (vamsas.objects.simple.MsaResult) org.apache.axis.utils.JavaUtils
429 .convert(_resp, vamsas.objects.simple.MsaResult.class);
434 public vamsas.objects.simple.WsJobId cancel(java.lang.String jobId)
435 throws java.rmi.RemoteException
437 if (super.cachedEndpoint == null)
439 throw new org.apache.axis.NoEndPointException();
442 org.apache.axis.client.Call _call = createCall();
443 _call.setOperation(_operations[3]);
444 _call.setUseSOAPAction(true);
445 _call.setSOAPActionURI("");
446 _call.setSOAPVersion(
447 org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
448 _call.setOperationName(
449 new javax.xml.namespace.QName("vamsas", "cancel"));
451 setRequestHeaders(_call);
452 setAttachments(_call);
454 java.lang.Object _resp = _call.invoke(new java.lang.Object[] { jobId });
456 if (_resp instanceof java.rmi.RemoteException)
458 throw (java.rmi.RemoteException) _resp;
462 extractAttachments(_call);
466 return (vamsas.objects.simple.WsJobId) _resp;
467 } catch (java.lang.Exception _exception)
469 return (vamsas.objects.simple.WsJobId) org.apache.axis.utils.JavaUtils
470 .convert(_resp, vamsas.objects.simple.WsJobId.class);