2 * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3 * Copyright (C) $$Year-Rel$$ The Jalview Authors
5 * This file is part of Jalview.
7 * Jalview is free software: you can redistribute it and/or
8 * modify it under the terms of the GNU General Public License
9 * as published by the Free Software Foundation, either version 3
10 * of the License, or (at your option) any later version.
12 * Jalview is distributed in the hope that it will be useful, but
13 * WITHOUT ANY WARRANTY; without even the implied warranty
14 * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15 * PURPOSE. See the GNU General Public License for more details.
17 * You should have received a copy of the GNU General Public License
18 * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19 * The Jalview Authors are detailed in the 'AUTHORS' file.
23 public class SeqSearchServiceSoapBindingStub extends
24 org.apache.axis.client.Stub implements ext.vamsas.SeqSearchI
26 private java.util.Vector cachedSerClasses = new java.util.Vector();
28 private java.util.Vector cachedSerQNames = new java.util.Vector();
30 private java.util.Vector cachedSerFactories = new java.util.Vector();
32 private java.util.Vector cachedDeserFactories = new java.util.Vector();
34 static org.apache.axis.description.OperationDesc[] _operations;
38 _operations = new org.apache.axis.description.OperationDesc[5];
39 _initOperationDesc1();
42 private static void _initOperationDesc1()
44 org.apache.axis.description.OperationDesc oper;
45 oper = new org.apache.axis.description.OperationDesc();
46 oper.setName("getDatabase");
47 oper.setReturnType(new javax.xml.namespace.QName(
48 "http://www.w3.org/2001/XMLSchema", "string"));
49 oper.setReturnClass(java.lang.String.class);
50 oper.setReturnQName(new javax.xml.namespace.QName("",
51 "getDatabaseReturn"));
52 oper.setStyle(org.apache.axis.constants.Style.RPC);
53 oper.setUse(org.apache.axis.constants.Use.ENCODED);
54 _operations[0] = oper;
56 oper = new org.apache.axis.description.OperationDesc();
57 oper.setName("getResult");
58 oper.addParameter(new javax.xml.namespace.QName("", "job_id"),
59 new javax.xml.namespace.QName(
60 "http://www.w3.org/2001/XMLSchema", "string"),
61 java.lang.String.class,
62 org.apache.axis.description.ParameterDesc.IN, false, false);
63 oper.setReturnType(new javax.xml.namespace.QName(
64 "simple.objects.vamsas", "SeqSearchResult"));
65 oper.setReturnClass(vamsas.objects.simple.SeqSearchResult.class);
66 oper.setReturnQName(new javax.xml.namespace.QName("", "getResultReturn"));
67 oper.setStyle(org.apache.axis.constants.Style.RPC);
68 oper.setUse(org.apache.axis.constants.Use.ENCODED);
69 _operations[1] = oper;
71 oper = new org.apache.axis.description.OperationDesc();
72 oper.setName("psearch");
73 oper.addParameter(new javax.xml.namespace.QName("", "al"),
74 new javax.xml.namespace.QName("simple.objects.vamsas",
75 "Alignment"), vamsas.objects.simple.Alignment.class,
76 org.apache.axis.description.ParameterDesc.IN, false, false);
77 oper.addParameter(new javax.xml.namespace.QName("", "database"),
78 new javax.xml.namespace.QName(
79 "http://www.w3.org/2001/XMLSchema", "string"),
80 java.lang.String.class,
81 org.apache.axis.description.ParameterDesc.IN, false, false);
82 oper.setReturnType(new javax.xml.namespace.QName(
83 "simple.objects.vamsas", "WsJobId"));
84 oper.setReturnClass(vamsas.objects.simple.WsJobId.class);
85 oper.setReturnQName(new javax.xml.namespace.QName("", "psearchReturn"));
86 oper.setStyle(org.apache.axis.constants.Style.RPC);
87 oper.setUse(org.apache.axis.constants.Use.ENCODED);
88 _operations[2] = oper;
90 oper = new org.apache.axis.description.OperationDesc();
91 oper.setName("search");
92 oper.addParameter(new javax.xml.namespace.QName("", "s"),
93 new javax.xml.namespace.QName("simple.objects.vamsas",
94 "Sequence"), vamsas.objects.simple.Sequence.class,
95 org.apache.axis.description.ParameterDesc.IN, false, false);
96 oper.addParameter(new javax.xml.namespace.QName("", "database"),
97 new javax.xml.namespace.QName(
98 "http://www.w3.org/2001/XMLSchema", "string"),
99 java.lang.String.class,
100 org.apache.axis.description.ParameterDesc.IN, false, false);
101 oper.setReturnType(new javax.xml.namespace.QName(
102 "simple.objects.vamsas", "WsJobId"));
103 oper.setReturnClass(vamsas.objects.simple.WsJobId.class);
104 oper.setReturnQName(new javax.xml.namespace.QName("", "searchReturn"));
105 oper.setStyle(org.apache.axis.constants.Style.RPC);
106 oper.setUse(org.apache.axis.constants.Use.ENCODED);
107 _operations[3] = oper;
109 oper = new org.apache.axis.description.OperationDesc();
110 oper.setName("cancel");
111 oper.addParameter(new javax.xml.namespace.QName("", "jobId"),
112 new javax.xml.namespace.QName(
113 "http://www.w3.org/2001/XMLSchema", "string"),
114 java.lang.String.class,
115 org.apache.axis.description.ParameterDesc.IN, false, false);
116 oper.setReturnType(new javax.xml.namespace.QName(
117 "simple.objects.vamsas", "WsJobId"));
118 oper.setReturnClass(vamsas.objects.simple.WsJobId.class);
119 oper.setReturnQName(new javax.xml.namespace.QName("", "cancelReturn"));
120 oper.setStyle(org.apache.axis.constants.Style.RPC);
121 oper.setUse(org.apache.axis.constants.Use.ENCODED);
122 _operations[4] = oper;
126 public SeqSearchServiceSoapBindingStub() throws org.apache.axis.AxisFault
131 public SeqSearchServiceSoapBindingStub(java.net.URL endpointURL,
132 javax.xml.rpc.Service service) throws org.apache.axis.AxisFault
135 super.cachedEndpoint = endpointURL;
138 public SeqSearchServiceSoapBindingStub(javax.xml.rpc.Service service)
139 throws org.apache.axis.AxisFault
143 super.service = new org.apache.axis.client.Service();
147 super.service = service;
150 javax.xml.namespace.QName qName;
151 java.lang.Class beansf = org.apache.axis.encoding.ser.BeanSerializerFactory.class;
152 java.lang.Class beandf = org.apache.axis.encoding.ser.BeanDeserializerFactory.class;
153 java.lang.Class enumsf = org.apache.axis.encoding.ser.EnumSerializerFactory.class;
154 java.lang.Class enumdf = org.apache.axis.encoding.ser.EnumDeserializerFactory.class;
155 java.lang.Class arraysf = org.apache.axis.encoding.ser.ArraySerializerFactory.class;
156 java.lang.Class arraydf = org.apache.axis.encoding.ser.ArrayDeserializerFactory.class;
157 java.lang.Class simplesf = org.apache.axis.encoding.ser.SimpleSerializerFactory.class;
158 java.lang.Class simpledf = org.apache.axis.encoding.ser.SimpleDeserializerFactory.class;
159 java.lang.Class simplelistsf = org.apache.axis.encoding.ser.SimpleListSerializerFactory.class;
160 java.lang.Class simplelistdf = org.apache.axis.encoding.ser.SimpleListDeserializerFactory.class;
161 qName = new javax.xml.namespace.QName("simple.objects.vamsas", "Result");
162 cachedSerQNames.add(qName);
163 cls = vamsas.objects.simple.Result.class;
164 cachedSerClasses.add(cls);
165 cachedSerFactories.add(beansf);
166 cachedDeserFactories.add(beandf);
168 qName = new javax.xml.namespace.QName("simple.objects.vamsas",
170 cachedSerQNames.add(qName);
171 cls = vamsas.objects.simple.WsJobId.class;
172 cachedSerClasses.add(cls);
173 cachedSerFactories.add(beansf);
174 cachedDeserFactories.add(beandf);
176 qName = new javax.xml.namespace.QName("http://simple.objects.vamsas",
178 cachedSerQNames.add(qName);
179 cls = vamsas.objects.simple.Object.class;
180 cachedSerClasses.add(cls);
181 cachedSerFactories.add(beansf);
182 cachedDeserFactories.add(beandf);
184 qName = new javax.xml.namespace.QName("vamsas", "ArrayOf_xsd_string");
185 cachedSerQNames.add(qName);
186 cls = java.lang.String[].class;
187 cachedSerClasses.add(cls);
188 cachedSerFactories.add(arraysf);
189 cachedDeserFactories.add(arraydf);
191 qName = new javax.xml.namespace.QName("simple.objects.vamsas",
193 cachedSerQNames.add(qName);
194 cls = vamsas.objects.simple.Alignment.class;
195 cachedSerClasses.add(cls);
196 cachedSerFactories.add(beansf);
197 cachedDeserFactories.add(beandf);
199 qName = new javax.xml.namespace.QName("simple.objects.vamsas",
201 cachedSerQNames.add(qName);
202 cls = vamsas.objects.simple.Sequence.class;
203 cachedSerClasses.add(cls);
204 cachedSerFactories.add(beansf);
205 cachedDeserFactories.add(beandf);
207 qName = new javax.xml.namespace.QName("vamsas", "ArrayOf_tns1_Sequence");
208 cachedSerQNames.add(qName);
209 cls = vamsas.objects.simple.Sequence[].class;
210 cachedSerClasses.add(cls);
211 cachedSerFactories.add(arraysf);
212 cachedDeserFactories.add(arraydf);
214 qName = new javax.xml.namespace.QName("simple.objects.vamsas",
216 cachedSerQNames.add(qName);
217 cls = vamsas.objects.simple.SeqSearchResult.class;
218 cachedSerClasses.add(cls);
219 cachedSerFactories.add(beansf);
220 cachedDeserFactories.add(beandf);
222 qName = new javax.xml.namespace.QName("simple.objects.vamsas",
224 cachedSerQNames.add(qName);
225 cls = vamsas.objects.simple.SequenceSet.class;
226 cachedSerClasses.add(cls);
227 cachedSerFactories.add(beansf);
228 cachedDeserFactories.add(beandf);
232 protected org.apache.axis.client.Call createCall()
233 throws java.rmi.RemoteException
237 org.apache.axis.client.Call _call = (org.apache.axis.client.Call) super.service
239 if (super.maintainSessionSet)
241 _call.setMaintainSession(super.maintainSession);
243 if (super.cachedUsername != null)
245 _call.setUsername(super.cachedUsername);
247 if (super.cachedPassword != null)
249 _call.setPassword(super.cachedPassword);
251 if (super.cachedEndpoint != null)
253 _call.setTargetEndpointAddress(super.cachedEndpoint);
255 if (super.cachedTimeout != null)
257 _call.setTimeout(super.cachedTimeout);
259 if (super.cachedPortName != null)
261 _call.setPortName(super.cachedPortName);
263 java.util.Enumeration keys = super.cachedProperties.keys();
264 while (keys.hasMoreElements())
266 java.lang.String key = (java.lang.String) keys.nextElement();
267 _call.setProperty(key, super.cachedProperties.get(key));
269 // All the type mapping information is registered
270 // when the first call is made.
271 // The type mapping information is actually registered in
272 // the TypeMappingRegistry of the service, which
273 // is the reason why registration is only needed for the first call.
278 // must set encoding style before registering serializers
279 _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
280 _call.setEncodingStyle(org.apache.axis.Constants.URI_SOAP11_ENC);
281 for (int i = 0; i < cachedSerFactories.size(); ++i)
283 java.lang.Class cls = (java.lang.Class) cachedSerClasses.get(i);
284 javax.xml.namespace.QName qName = (javax.xml.namespace.QName) cachedSerQNames
286 java.lang.Class sf = (java.lang.Class) cachedSerFactories
288 java.lang.Class df = (java.lang.Class) cachedDeserFactories
290 _call.registerTypeMapping(cls, qName, sf, df, false);
295 } catch (java.lang.Throwable _t)
297 throw new org.apache.axis.AxisFault(
298 "Failure trying to get the Call object", _t);
302 public java.lang.String getDatabase() throws java.rmi.RemoteException
304 if (super.cachedEndpoint == null)
306 throw new org.apache.axis.NoEndPointException();
308 org.apache.axis.client.Call _call = createCall();
309 _call.setOperation(_operations[0]);
310 _call.setUseSOAPAction(true);
311 _call.setSOAPActionURI("");
312 _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
313 _call.setOperationName(new javax.xml.namespace.QName("vamsas",
316 setRequestHeaders(_call);
317 setAttachments(_call);
318 java.lang.Object _resp = _call.invoke(new java.lang.Object[] {});
320 if (_resp instanceof java.rmi.RemoteException)
322 throw (java.rmi.RemoteException) _resp;
326 extractAttachments(_call);
329 return (java.lang.String) _resp;
330 } catch (java.lang.Exception _exception)
332 return (java.lang.String) org.apache.axis.utils.JavaUtils.convert(
333 _resp, java.lang.String.class);
338 public vamsas.objects.simple.SeqSearchResult getResult(
339 java.lang.String job_id) throws java.rmi.RemoteException
341 if (super.cachedEndpoint == null)
343 throw new org.apache.axis.NoEndPointException();
345 org.apache.axis.client.Call _call = createCall();
346 _call.setOperation(_operations[1]);
347 _call.setUseSOAPAction(true);
348 _call.setSOAPActionURI("");
349 _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
350 _call.setOperationName(new javax.xml.namespace.QName("vamsas",
353 setRequestHeaders(_call);
354 setAttachments(_call);
355 java.lang.Object _resp = _call
356 .invoke(new java.lang.Object[] { job_id });
358 if (_resp instanceof java.rmi.RemoteException)
360 throw (java.rmi.RemoteException) _resp;
364 extractAttachments(_call);
367 return (vamsas.objects.simple.SeqSearchResult) _resp;
368 } catch (java.lang.Exception _exception)
370 return (vamsas.objects.simple.SeqSearchResult) org.apache.axis.utils.JavaUtils
371 .convert(_resp, vamsas.objects.simple.SeqSearchResult.class);
376 public vamsas.objects.simple.WsJobId psearch(
377 vamsas.objects.simple.Alignment al, java.lang.String database)
378 throws java.rmi.RemoteException
380 if (super.cachedEndpoint == null)
382 throw new org.apache.axis.NoEndPointException();
384 org.apache.axis.client.Call _call = createCall();
385 _call.setOperation(_operations[2]);
386 _call.setUseSOAPAction(true);
387 _call.setSOAPActionURI("");
388 _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
389 _call.setOperationName(new javax.xml.namespace.QName("vamsas",
392 setRequestHeaders(_call);
393 setAttachments(_call);
394 java.lang.Object _resp = _call.invoke(new java.lang.Object[] { al,
397 if (_resp instanceof java.rmi.RemoteException)
399 throw (java.rmi.RemoteException) _resp;
403 extractAttachments(_call);
406 return (vamsas.objects.simple.WsJobId) _resp;
407 } catch (java.lang.Exception _exception)
409 return (vamsas.objects.simple.WsJobId) org.apache.axis.utils.JavaUtils
410 .convert(_resp, vamsas.objects.simple.WsJobId.class);
415 public vamsas.objects.simple.WsJobId search(
416 vamsas.objects.simple.Sequence s, java.lang.String database)
417 throws java.rmi.RemoteException
419 if (super.cachedEndpoint == null)
421 throw new org.apache.axis.NoEndPointException();
423 org.apache.axis.client.Call _call = createCall();
424 _call.setOperation(_operations[3]);
425 _call.setUseSOAPAction(true);
426 _call.setSOAPActionURI("");
427 _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
428 _call.setOperationName(new javax.xml.namespace.QName("vamsas", "search"));
430 setRequestHeaders(_call);
431 setAttachments(_call);
432 java.lang.Object _resp = _call.invoke(new java.lang.Object[] { s,
435 if (_resp instanceof java.rmi.RemoteException)
437 throw (java.rmi.RemoteException) _resp;
441 extractAttachments(_call);
444 return (vamsas.objects.simple.WsJobId) _resp;
445 } catch (java.lang.Exception _exception)
447 return (vamsas.objects.simple.WsJobId) org.apache.axis.utils.JavaUtils
448 .convert(_resp, vamsas.objects.simple.WsJobId.class);
453 public vamsas.objects.simple.WsJobId cancel(java.lang.String jobId)
454 throws java.rmi.RemoteException
456 if (super.cachedEndpoint == null)
458 throw new org.apache.axis.NoEndPointException();
460 org.apache.axis.client.Call _call = createCall();
461 _call.setOperation(_operations[4]);
462 _call.setUseSOAPAction(true);
463 _call.setSOAPActionURI("");
464 _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
465 _call.setOperationName(new javax.xml.namespace.QName("vamsas", "cancel"));
467 setRequestHeaders(_call);
468 setAttachments(_call);
469 java.lang.Object _resp = _call.invoke(new java.lang.Object[] { jobId });
471 if (_resp instanceof java.rmi.RemoteException)
473 throw (java.rmi.RemoteException) _resp;
477 extractAttachments(_call);
480 return (vamsas.objects.simple.WsJobId) _resp;
481 } catch (java.lang.Exception _exception)
483 return (vamsas.objects.simple.WsJobId) org.apache.axis.utils.JavaUtils
484 .convert(_resp, vamsas.objects.simple.WsJobId.class);