src/ext/vamsas/SeqSearchServiceSoapBindingStub.java

   1 /**\r
   2  * ScanPSServiceSoapBindingStub.java\r
   3  *\r
   4  * This file was auto-generated from WSDL\r
   5  * by the Apache Axis 1.2RC2 Nov 16, 2004 (12:19:44 EST) WSDL2Java emitter.\r
   6  */\r
   7 \r
   8 package ext.vamsas;\r
   9 \r
  10 public class SeqSearchServiceSoapBindingStub extends org.apache.axis.client.Stub implements ext.vamsas.SeqSearchI {\r
  11     private java.util.Vector cachedSerClasses = new java.util.Vector();\r
  12     private java.util.Vector cachedSerQNames = new java.util.Vector();\r
  13     private java.util.Vector cachedSerFactories = new java.util.Vector();\r
  14     private java.util.Vector cachedDeserFactories = new java.util.Vector();\r
  15 \r
  16     static org.apache.axis.description.OperationDesc [] _operations;\r
  17 \r
  18     static {\r
  19         _operations = new org.apache.axis.description.OperationDesc[5];\r
  20         _initOperationDesc1();\r
  21     }
  22 \r
  23     private static void _initOperationDesc1(){\r
  24         org.apache.axis.description.OperationDesc oper;\r
  25         oper = new org.apache.axis.description.OperationDesc();\r
  26         oper.setName("getDatabase");\r
  27         oper.setReturnType(new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "string"));\r
  28         oper.setReturnClass(java.lang.String.class);\r
  29         oper.setReturnQName(new javax.xml.namespace.QName("", "getDatabaseReturn"));\r
  30         oper.setStyle(org.apache.axis.constants.Style.RPC);\r
  31         oper.setUse(org.apache.axis.constants.Use.ENCODED);\r
  32         _operations[0] = oper;\r
  33 \r
  34         oper = new org.apache.axis.description.OperationDesc();\r
  35         oper.setName("getResult");\r
  36         oper.addParameter(new javax.xml.namespace.QName("", "job_id"), new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "string"), java.lang.String.class, org.apache.axis.description.ParameterDesc.IN, false, false);\r
  37         oper.setReturnType(new javax.xml.namespace.QName("simple.objects.vamsas", "SeqSearchResult"));\r
  38         oper.setReturnClass(vamsas.objects.simple.SeqSearchResult.class);\r
  39         oper.setReturnQName(new javax.xml.namespace.QName("", "getResultReturn"));\r
  40         oper.setStyle(org.apache.axis.constants.Style.RPC);\r
  41         oper.setUse(org.apache.axis.constants.Use.ENCODED);\r
  42         _operations[1] = oper;\r
  43 \r
  44         oper = new org.apache.axis.description.OperationDesc();\r
  45         oper.setName("psearch");\r
  46         oper.addParameter(new javax.xml.namespace.QName("", "al"), new javax.xml.namespace.QName("simple.objects.vamsas", "Alignment"), vamsas.objects.simple.Alignment.class, org.apache.axis.description.ParameterDesc.IN, false, false);\r
  47         oper.addParameter(new javax.xml.namespace.QName("", "database"), new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "string"), java.lang.String.class, org.apache.axis.description.ParameterDesc.IN, false, false);\r
  48         oper.setReturnType(new javax.xml.namespace.QName("simple.objects.vamsas", "WsJobId"));\r
  49         oper.setReturnClass(vamsas.objects.simple.WsJobId.class);\r
  50         oper.setReturnQName(new javax.xml.namespace.QName("", "psearchReturn"));\r
  51         oper.setStyle(org.apache.axis.constants.Style.RPC);\r
  52         oper.setUse(org.apache.axis.constants.Use.ENCODED);\r
  53         _operations[2] = oper;\r
  54 \r
  55         oper = new org.apache.axis.description.OperationDesc();\r
  56         oper.setName("search");\r
  57         oper.addParameter(new javax.xml.namespace.QName("", "s"), new javax.xml.namespace.QName("simple.objects.vamsas", "Sequence"), vamsas.objects.simple.Sequence.class, org.apache.axis.description.ParameterDesc.IN, false, false);\r
  58         oper.addParameter(new javax.xml.namespace.QName("", "database"), new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "string"), java.lang.String.class, org.apache.axis.description.ParameterDesc.IN, false, false);\r
  59         oper.setReturnType(new javax.xml.namespace.QName("simple.objects.vamsas", "WsJobId"));\r
  60         oper.setReturnClass(vamsas.objects.simple.WsJobId.class);\r
  61         oper.setReturnQName(new javax.xml.namespace.QName("", "searchReturn"));\r
  62         oper.setStyle(org.apache.axis.constants.Style.RPC);\r
  63         oper.setUse(org.apache.axis.constants.Use.ENCODED);\r
  64         _operations[3] = oper;\r
  65 \r
  66         oper = new org.apache.axis.description.OperationDesc();\r
  67         oper.setName("cancel");\r
  68         oper.addParameter(new javax.xml.namespace.QName("", "jobId"), new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "string"), java.lang.String.class, org.apache.axis.description.ParameterDesc.IN, false, false);\r
  69         oper.setReturnType(new javax.xml.namespace.QName("simple.objects.vamsas", "WsJobId"));\r
  70         oper.setReturnClass(vamsas.objects.simple.WsJobId.class);\r
  71         oper.setReturnQName(new javax.xml.namespace.QName("", "cancelReturn"));\r
  72         oper.setStyle(org.apache.axis.constants.Style.RPC);\r
  73         oper.setUse(org.apache.axis.constants.Use.ENCODED);\r
  74         _operations[4] = oper;\r
  75 \r
  76     }\r
  77 \r
  78     public SeqSearchServiceSoapBindingStub() throws org.apache.axis.AxisFault {\r
  79          this(null);\r
  80     }\r
  81 \r
  82     public SeqSearchServiceSoapBindingStub(java.net.URL endpointURL, javax.xml.rpc.Service service) throws org.apache.axis.AxisFault {\r
  83          this(service);\r
  84          super.cachedEndpoint = endpointURL;\r
  85     }\r
  86 \r
  87     public SeqSearchServiceSoapBindingStub(javax.xml.rpc.Service service) throws org.apache.axis.AxisFault {\r
  88         if (service == null) {\r
  89             super.service = new org.apache.axis.client.Service();\r
  90         } else {\r
  91             super.service = service;\r
  92         }\r
  93             java.lang.Class cls;\r
  94             javax.xml.namespace.QName qName;\r
  95             java.lang.Class beansf = org.apache.axis.encoding.ser.BeanSerializerFactory.class;\r
  96             java.lang.Class beandf = org.apache.axis.encoding.ser.BeanDeserializerFactory.class;\r
  97             java.lang.Class enumsf = org.apache.axis.encoding.ser.EnumSerializerFactory.class;\r
  98             java.lang.Class enumdf = org.apache.axis.encoding.ser.EnumDeserializerFactory.class;\r
  99             java.lang.Class arraysf = org.apache.axis.encoding.ser.ArraySerializerFactory.class;\r
 100             java.lang.Class arraydf = org.apache.axis.encoding.ser.ArrayDeserializerFactory.class;\r
 101             java.lang.Class simplesf = org.apache.axis.encoding.ser.SimpleSerializerFactory.class;\r
 102             java.lang.Class simpledf = org.apache.axis.encoding.ser.SimpleDeserializerFactory.class;\r
 103             java.lang.Class simplelistsf = org.apache.axis.encoding.ser.SimpleListSerializerFactory.class;\r
 104             java.lang.Class simplelistdf = org.apache.axis.encoding.ser.SimpleListDeserializerFactory.class;\r
 105             qName = new javax.xml.namespace.QName("simple.objects.vamsas", "Result");\r
 106             cachedSerQNames.add(qName);\r
 107             cls = vamsas.objects.simple.Result.class;\r
 108             cachedSerClasses.add(cls);\r
 109             cachedSerFactories.add(beansf);\r
 110             cachedDeserFactories.add(beandf);\r
 111 \r
 112             qName = new javax.xml.namespace.QName("simple.objects.vamsas", "WsJobId");\r
 113             cachedSerQNames.add(qName);\r
 114             cls = vamsas.objects.simple.WsJobId.class;\r
 115             cachedSerClasses.add(cls);\r
 116             cachedSerFactories.add(beansf);\r
 117             cachedDeserFactories.add(beandf);\r
 118 \r
 119             qName = new javax.xml.namespace.QName("http://simple.objects.vamsas", "Object");\r
 120             cachedSerQNames.add(qName);\r
 121             cls = vamsas.objects.simple.Object.class;\r
 122             cachedSerClasses.add(cls);\r
 123             cachedSerFactories.add(beansf);\r
 124             cachedDeserFactories.add(beandf);\r
 125 \r
 126             qName = new javax.xml.namespace.QName("vamsas", "ArrayOf_xsd_string");\r
 127             cachedSerQNames.add(qName);\r
 128             cls = java.lang.String[].class;\r
 129             cachedSerClasses.add(cls);\r
 130             cachedSerFactories.add(arraysf);\r
 131             cachedDeserFactories.add(arraydf);\r
 132 \r
 133             qName = new javax.xml.namespace.QName("simple.objects.vamsas", "Alignment");\r
 134             cachedSerQNames.add(qName);\r
 135             cls = vamsas.objects.simple.Alignment.class;\r
 136             cachedSerClasses.add(cls);\r
 137             cachedSerFactories.add(beansf);\r
 138             cachedDeserFactories.add(beandf);\r
 139 \r
 140             qName = new javax.xml.namespace.QName("simple.objects.vamsas", "Sequence");\r
 141             cachedSerQNames.add(qName);\r
 142             cls = vamsas.objects.simple.Sequence.class;\r
 143             cachedSerClasses.add(cls);\r
 144             cachedSerFactories.add(beansf);\r
 145             cachedDeserFactories.add(beandf);\r
 146 \r
 147             qName = new javax.xml.namespace.QName("vamsas", "ArrayOf_tns1_Sequence");\r
 148             cachedSerQNames.add(qName);\r
 149             cls = vamsas.objects.simple.Sequence[].class;\r
 150             cachedSerClasses.add(cls);\r
 151             cachedSerFactories.add(arraysf);\r
 152             cachedDeserFactories.add(arraydf);\r
 153 \r
 154             qName = new javax.xml.namespace.QName("simple.objects.vamsas", "SeqSearchResult");\r
 155             cachedSerQNames.add(qName);\r
 156             cls = vamsas.objects.simple.SeqSearchResult.class;\r
 157             cachedSerClasses.add(cls);\r
 158             cachedSerFactories.add(beansf);\r
 159             cachedDeserFactories.add(beandf);\r
 160 \r
 161             qName = new javax.xml.namespace.QName("simple.objects.vamsas", "SequenceSet");\r
 162             cachedSerQNames.add(qName);\r
 163             cls = vamsas.objects.simple.SequenceSet.class;\r
 164             cachedSerClasses.add(cls);\r
 165             cachedSerFactories.add(beansf);\r
 166             cachedDeserFactories.add(beandf);\r
 167 \r
 168     }\r
 169 \r
 170     protected org.apache.axis.client.Call createCall() throws java.rmi.RemoteException {\r
 171         try {\r
 172             org.apache.axis.client.Call _call =\r
 173                     (org.apache.axis.client.Call) super.service.createCall();\r
 174             if (super.maintainSessionSet) {\r
 175                 _call.setMaintainSession(super.maintainSession);\r
 176             }\r
 177             if (super.cachedUsername != null) {\r
 178                 _call.setUsername(super.cachedUsername);\r
 179             }\r
 180             if (super.cachedPassword != null) {\r
 181                 _call.setPassword(super.cachedPassword);\r
 182             }\r
 183             if (super.cachedEndpoint != null) {\r
 184                 _call.setTargetEndpointAddress(super.cachedEndpoint);\r
 185             }\r
 186             if (super.cachedTimeout != null) {\r
 187                 _call.setTimeout(super.cachedTimeout);\r
 188             }\r
 189             if (super.cachedPortName != null) {\r
 190                 _call.setPortName(super.cachedPortName);\r
 191             }\r
 192             java.util.Enumeration keys = super.cachedProperties.keys();\r
 193             while (keys.hasMoreElements()) {\r
 194                 java.lang.String key = (java.lang.String) keys.nextElement();\r
 195                 _call.setProperty(key, super.cachedProperties.get(key));\r
 196             }\r
 197             // All the type mapping information is registered\r
 198             // when the first call is made.\r
 199             // The type mapping information is actually registered in\r
 200             // the TypeMappingRegistry of the service, which\r
 201             // is the reason why registration is only needed for the first call.\r
 202             synchronized (this) {\r
 203                 if (firstCall()) {\r
 204                     // must set encoding style before registering serializers\r
 205                     _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);\r
 206                     _call.setEncodingStyle(org.apache.axis.Constants.URI_SOAP11_ENC);\r
 207                     for (int i = 0; i < cachedSerFactories.size(); ++i) {\r
 208                         java.lang.Class cls = (java.lang.Class) cachedSerClasses.get(i);\r
 209                         javax.xml.namespace.QName qName =\r
 210                                 (javax.xml.namespace.QName) cachedSerQNames.get(i);\r
 211                         java.lang.Class sf = (java.lang.Class)\r
 212                                  cachedSerFactories.get(i);\r
 213                         java.lang.Class df = (java.lang.Class)\r
 214                                  cachedDeserFactories.get(i);\r
 215                         _call.registerTypeMapping(cls, qName, sf, df, false);\r
 216                     }\r
 217                 }\r
 218             }\r
 219             return _call;\r
 220         }\r
 221         catch (java.lang.Throwable _t) {\r
 222             throw new org.apache.axis.AxisFault("Failure trying to get the Call object", _t);\r
 223         }\r
 224     }\r
 225 \r
 226     public java.lang.String getDatabase() throws java.rmi.RemoteException {\r
 227         if (super.cachedEndpoint == null) {\r
 228             throw new org.apache.axis.NoEndPointException();\r
 229         }\r
 230         org.apache.axis.client.Call _call = createCall();\r
 231         _call.setOperation(_operations[0]);\r
 232         _call.setUseSOAPAction(true);\r
 233         _call.setSOAPActionURI("");\r
 234         _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);\r
 235         _call.setOperationName(new javax.xml.namespace.QName("vamsas", "getDatabase"));\r
 236 \r
 237         setRequestHeaders(_call);\r
 238         setAttachments(_call);\r
 239         java.lang.Object _resp = _call.invoke(new java.lang.Object[] {});\r
 240 \r
 241         if (_resp instanceof java.rmi.RemoteException) {\r
 242             throw (java.rmi.RemoteException)_resp;\r
 243         }\r
 244         else {\r
 245             extractAttachments(_call);\r
 246             try {\r
 247                 return (java.lang.String) _resp;\r
 248             } catch (java.lang.Exception _exception) {\r
 249                 return (java.lang.String) org.apache.axis.utils.JavaUtils.convert(_resp, java.lang.String.class);\r
 250             }\r
 251         }\r
 252     }\r
 253 \r
 254     public vamsas.objects.simple.SeqSearchResult getResult(java.lang.String job_id) throws java.rmi.RemoteException {\r
 255         if (super.cachedEndpoint == null) {\r
 256             throw new org.apache.axis.NoEndPointException();\r
 257         }\r
 258         org.apache.axis.client.Call _call = createCall();\r
 259         _call.setOperation(_operations[1]);\r
 260         _call.setUseSOAPAction(true);\r
 261         _call.setSOAPActionURI("");\r
 262         _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);\r
 263         _call.setOperationName(new javax.xml.namespace.QName("vamsas", "getResult"));\r
 264 \r
 265         setRequestHeaders(_call);\r
 266         setAttachments(_call);\r
 267         java.lang.Object _resp = _call.invoke(new java.lang.Object[] {job_id});\r
 268 \r
 269         if (_resp instanceof java.rmi.RemoteException) {\r
 270             throw (java.rmi.RemoteException)_resp;\r
 271         }\r
 272         else {\r
 273             extractAttachments(_call);\r
 274             try {\r
 275                 return (vamsas.objects.simple.SeqSearchResult) _resp;\r
 276             } catch (java.lang.Exception _exception) {\r
 277                 return (vamsas.objects.simple.SeqSearchResult) org.apache.axis.utils.JavaUtils.convert(_resp, vamsas.objects.simple.SeqSearchResult.class);\r
 278             }\r
 279         }\r
 280     }\r
 281 \r
 282     public vamsas.objects.simple.WsJobId psearch(vamsas.objects.simple.Alignment al, java.lang.String database) throws java.rmi.RemoteException {\r
 283         if (super.cachedEndpoint == null) {\r
 284             throw new org.apache.axis.NoEndPointException();\r
 285         }\r
 286         org.apache.axis.client.Call _call = createCall();\r
 287         _call.setOperation(_operations[2]);\r
 288         _call.setUseSOAPAction(true);\r
 289         _call.setSOAPActionURI("");\r
 290         _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);\r
 291         _call.setOperationName(new javax.xml.namespace.QName("vamsas", "psearch"));\r
 292 \r
 293         setRequestHeaders(_call);\r
 294         setAttachments(_call);\r
 295         java.lang.Object _resp = _call.invoke(new java.lang.Object[] {al, database});\r
 296 \r
 297         if (_resp instanceof java.rmi.RemoteException) {\r
 298             throw (java.rmi.RemoteException)_resp;\r
 299         }\r
 300         else {\r
 301             extractAttachments(_call);\r
 302             try {\r
 303                 return (vamsas.objects.simple.WsJobId) _resp;\r
 304             } catch (java.lang.Exception _exception) {\r
 305                 return (vamsas.objects.simple.WsJobId) org.apache.axis.utils.JavaUtils.convert(_resp, vamsas.objects.simple.WsJobId.class);\r
 306             }\r
 307         }\r
 308     }\r
 309 \r
 310     public vamsas.objects.simple.WsJobId search(vamsas.objects.simple.Sequence s, java.lang.String database) throws java.rmi.RemoteException {\r
 311         if (super.cachedEndpoint == null) {\r
 312             throw new org.apache.axis.NoEndPointException();\r
 313         }\r
 314         org.apache.axis.client.Call _call = createCall();\r
 315         _call.setOperation(_operations[3]);\r
 316         _call.setUseSOAPAction(true);\r
 317         _call.setSOAPActionURI("");\r
 318         _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);\r
 319         _call.setOperationName(new javax.xml.namespace.QName("vamsas", "search"));\r
 320 \r
 321         setRequestHeaders(_call);\r
 322         setAttachments(_call);\r
 323         java.lang.Object _resp = _call.invoke(new java.lang.Object[] {s, database});\r
 324 \r
 325         if (_resp instanceof java.rmi.RemoteException) {\r
 326             throw (java.rmi.RemoteException)_resp;\r
 327         }\r
 328         else {\r
 329             extractAttachments(_call);\r
 330             try {\r
 331                 return (vamsas.objects.simple.WsJobId) _resp;\r
 332             } catch (java.lang.Exception _exception) {\r
 333                 return (vamsas.objects.simple.WsJobId) org.apache.axis.utils.JavaUtils.convert(_resp, vamsas.objects.simple.WsJobId.class);\r
 334             }\r
 335         }\r
 336     }\r
 337 \r
 338     public vamsas.objects.simple.WsJobId cancel(java.lang.String jobId) throws java.rmi.RemoteException {\r
 339         if (super.cachedEndpoint == null) {\r
 340             throw new org.apache.axis.NoEndPointException();\r
 341         }\r
 342         org.apache.axis.client.Call _call = createCall();\r
 343         _call.setOperation(_operations[4]);\r
 344         _call.setUseSOAPAction(true);\r
 345         _call.setSOAPActionURI("");\r
 346         _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);\r
 347         _call.setOperationName(new javax.xml.namespace.QName("vamsas", "cancel"));\r
 348 \r
 349         setRequestHeaders(_call);\r
 350         setAttachments(_call);\r
 351         java.lang.Object _resp = _call.invoke(new java.lang.Object[] {jobId});\r
 352 \r
 353         if (_resp instanceof java.rmi.RemoteException) {\r
 354             throw (java.rmi.RemoteException)_resp;\r
 355         }\r
 356         else {\r
 357             extractAttachments(_call);\r
 358             try {\r
 359                 return (vamsas.objects.simple.WsJobId) _resp;\r
 360             } catch (java.lang.Exception _exception) {\r
 361                 return (vamsas.objects.simple.WsJobId) org.apache.axis.utils.JavaUtils.convert(_resp, vamsas.objects.simple.WsJobId.class);\r
 362             }\r
 363         }\r
 364     }\r
 365 \r
 366 }\r