2 * Jalview - A Sequence Alignment Editor and Viewer (Version 2.5)
\r
3 * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
5 * This file is part of Jalview.
\r
7 * Jalview is free software: you can redistribute it and/or
\r
8 * modify it under the terms of the GNU General Public License
\r
9 * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
\r
11 * Jalview is distributed in the hope that it will be useful, but
\r
12 * WITHOUT ANY WARRANTY; without even the implied warranty
\r
13 * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
\r
14 * PURPOSE. See the GNU General Public License for more details.
\r
16 * You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
\r
20 public class SeqSearchServiceSoapBindingStub extends
\r
21 org.apache.axis.client.Stub implements ext.vamsas.SeqSearchI
\r
23 private java.util.Vector cachedSerClasses = new java.util.Vector();
\r
25 private java.util.Vector cachedSerQNames = new java.util.Vector();
\r
27 private java.util.Vector cachedSerFactories = new java.util.Vector();
\r
29 private java.util.Vector cachedDeserFactories = new java.util.Vector();
\r
31 static org.apache.axis.description.OperationDesc[] _operations;
\r
35 _operations = new org.apache.axis.description.OperationDesc[5];
\r
36 _initOperationDesc1();
\r
39 private static void _initOperationDesc1()
\r
41 org.apache.axis.description.OperationDesc oper;
\r
42 oper = new org.apache.axis.description.OperationDesc();
\r
43 oper.setName("getDatabase");
\r
44 oper.setReturnType(new javax.xml.namespace.QName(
\r
45 "http://www.w3.org/2001/XMLSchema", "string"));
\r
46 oper.setReturnClass(java.lang.String.class);
\r
47 oper.setReturnQName(new javax.xml.namespace.QName("",
\r
48 "getDatabaseReturn"));
\r
49 oper.setStyle(org.apache.axis.constants.Style.RPC);
\r
50 oper.setUse(org.apache.axis.constants.Use.ENCODED);
\r
51 _operations[0] = oper;
\r
53 oper = new org.apache.axis.description.OperationDesc();
\r
54 oper.setName("getResult");
\r
55 oper.addParameter(new javax.xml.namespace.QName("", "job_id"),
\r
56 new javax.xml.namespace.QName(
\r
57 "http://www.w3.org/2001/XMLSchema", "string"),
\r
58 java.lang.String.class,
\r
59 org.apache.axis.description.ParameterDesc.IN, false, false);
\r
60 oper.setReturnType(new javax.xml.namespace.QName(
\r
61 "simple.objects.vamsas", "SeqSearchResult"));
\r
62 oper.setReturnClass(vamsas.objects.simple.SeqSearchResult.class);
\r
64 .setReturnQName(new javax.xml.namespace.QName("",
\r
65 "getResultReturn"));
\r
66 oper.setStyle(org.apache.axis.constants.Style.RPC);
\r
67 oper.setUse(org.apache.axis.constants.Use.ENCODED);
\r
68 _operations[1] = oper;
\r
70 oper = new org.apache.axis.description.OperationDesc();
\r
71 oper.setName("psearch");
\r
72 oper.addParameter(new javax.xml.namespace.QName("", "al"),
\r
73 new javax.xml.namespace.QName("simple.objects.vamsas",
\r
74 "Alignment"), vamsas.objects.simple.Alignment.class,
\r
75 org.apache.axis.description.ParameterDesc.IN, false, false);
\r
76 oper.addParameter(new javax.xml.namespace.QName("", "database"),
\r
77 new javax.xml.namespace.QName(
\r
78 "http://www.w3.org/2001/XMLSchema", "string"),
\r
79 java.lang.String.class,
\r
80 org.apache.axis.description.ParameterDesc.IN, false, false);
\r
81 oper.setReturnType(new javax.xml.namespace.QName(
\r
82 "simple.objects.vamsas", "WsJobId"));
\r
83 oper.setReturnClass(vamsas.objects.simple.WsJobId.class);
\r
84 oper.setReturnQName(new javax.xml.namespace.QName("", "psearchReturn"));
\r
85 oper.setStyle(org.apache.axis.constants.Style.RPC);
\r
86 oper.setUse(org.apache.axis.constants.Use.ENCODED);
\r
87 _operations[2] = oper;
\r
89 oper = new org.apache.axis.description.OperationDesc();
\r
90 oper.setName("search");
\r
91 oper.addParameter(new javax.xml.namespace.QName("", "s"),
\r
92 new javax.xml.namespace.QName("simple.objects.vamsas",
\r
93 "Sequence"), vamsas.objects.simple.Sequence.class,
\r
94 org.apache.axis.description.ParameterDesc.IN, false, false);
\r
95 oper.addParameter(new javax.xml.namespace.QName("", "database"),
\r
96 new javax.xml.namespace.QName(
\r
97 "http://www.w3.org/2001/XMLSchema", "string"),
\r
98 java.lang.String.class,
\r
99 org.apache.axis.description.ParameterDesc.IN, false, false);
\r
100 oper.setReturnType(new javax.xml.namespace.QName(
\r
101 "simple.objects.vamsas", "WsJobId"));
\r
102 oper.setReturnClass(vamsas.objects.simple.WsJobId.class);
\r
103 oper.setReturnQName(new javax.xml.namespace.QName("", "searchReturn"));
\r
104 oper.setStyle(org.apache.axis.constants.Style.RPC);
\r
105 oper.setUse(org.apache.axis.constants.Use.ENCODED);
\r
106 _operations[3] = oper;
\r
108 oper = new org.apache.axis.description.OperationDesc();
\r
109 oper.setName("cancel");
\r
110 oper.addParameter(new javax.xml.namespace.QName("", "jobId"),
\r
111 new javax.xml.namespace.QName(
\r
112 "http://www.w3.org/2001/XMLSchema", "string"),
\r
113 java.lang.String.class,
\r
114 org.apache.axis.description.ParameterDesc.IN, false, false);
\r
115 oper.setReturnType(new javax.xml.namespace.QName(
\r
116 "simple.objects.vamsas", "WsJobId"));
\r
117 oper.setReturnClass(vamsas.objects.simple.WsJobId.class);
\r
118 oper.setReturnQName(new javax.xml.namespace.QName("", "cancelReturn"));
\r
119 oper.setStyle(org.apache.axis.constants.Style.RPC);
\r
120 oper.setUse(org.apache.axis.constants.Use.ENCODED);
\r
121 _operations[4] = oper;
\r
125 public SeqSearchServiceSoapBindingStub() throws org.apache.axis.AxisFault
\r
130 public SeqSearchServiceSoapBindingStub(java.net.URL endpointURL,
\r
131 javax.xml.rpc.Service service) throws org.apache.axis.AxisFault
\r
134 super.cachedEndpoint = endpointURL;
\r
137 public SeqSearchServiceSoapBindingStub(javax.xml.rpc.Service service)
\r
138 throws org.apache.axis.AxisFault
\r
140 if (service == null)
\r
142 super.service = new org.apache.axis.client.Service();
\r
146 super.service = service;
\r
148 java.lang.Class cls;
\r
149 javax.xml.namespace.QName qName;
\r
150 java.lang.Class beansf = org.apache.axis.encoding.ser.BeanSerializerFactory.class;
\r
151 java.lang.Class beandf = org.apache.axis.encoding.ser.BeanDeserializerFactory.class;
\r
152 java.lang.Class enumsf = org.apache.axis.encoding.ser.EnumSerializerFactory.class;
\r
153 java.lang.Class enumdf = org.apache.axis.encoding.ser.EnumDeserializerFactory.class;
\r
154 java.lang.Class arraysf = org.apache.axis.encoding.ser.ArraySerializerFactory.class;
\r
155 java.lang.Class arraydf = org.apache.axis.encoding.ser.ArrayDeserializerFactory.class;
\r
156 java.lang.Class simplesf = org.apache.axis.encoding.ser.SimpleSerializerFactory.class;
\r
157 java.lang.Class simpledf = org.apache.axis.encoding.ser.SimpleDeserializerFactory.class;
\r
158 java.lang.Class simplelistsf = org.apache.axis.encoding.ser.SimpleListSerializerFactory.class;
\r
159 java.lang.Class simplelistdf = org.apache.axis.encoding.ser.SimpleListDeserializerFactory.class;
\r
160 qName = new javax.xml.namespace.QName("simple.objects.vamsas", "Result");
\r
161 cachedSerQNames.add(qName);
\r
162 cls = vamsas.objects.simple.Result.class;
\r
163 cachedSerClasses.add(cls);
\r
164 cachedSerFactories.add(beansf);
\r
165 cachedDeserFactories.add(beandf);
\r
167 qName = new javax.xml.namespace.QName("simple.objects.vamsas",
\r
169 cachedSerQNames.add(qName);
\r
170 cls = vamsas.objects.simple.WsJobId.class;
\r
171 cachedSerClasses.add(cls);
\r
172 cachedSerFactories.add(beansf);
\r
173 cachedDeserFactories.add(beandf);
\r
175 qName = new javax.xml.namespace.QName("http://simple.objects.vamsas",
\r
177 cachedSerQNames.add(qName);
\r
178 cls = vamsas.objects.simple.Object.class;
\r
179 cachedSerClasses.add(cls);
\r
180 cachedSerFactories.add(beansf);
\r
181 cachedDeserFactories.add(beandf);
\r
183 qName = new javax.xml.namespace.QName("vamsas", "ArrayOf_xsd_string");
\r
184 cachedSerQNames.add(qName);
\r
185 cls = java.lang.String[].class;
\r
186 cachedSerClasses.add(cls);
\r
187 cachedSerFactories.add(arraysf);
\r
188 cachedDeserFactories.add(arraydf);
\r
190 qName = new javax.xml.namespace.QName("simple.objects.vamsas",
\r
192 cachedSerQNames.add(qName);
\r
193 cls = vamsas.objects.simple.Alignment.class;
\r
194 cachedSerClasses.add(cls);
\r
195 cachedSerFactories.add(beansf);
\r
196 cachedDeserFactories.add(beandf);
\r
198 qName = new javax.xml.namespace.QName("simple.objects.vamsas",
\r
200 cachedSerQNames.add(qName);
\r
201 cls = vamsas.objects.simple.Sequence.class;
\r
202 cachedSerClasses.add(cls);
\r
203 cachedSerFactories.add(beansf);
\r
204 cachedDeserFactories.add(beandf);
\r
206 qName = new javax.xml.namespace.QName("vamsas", "ArrayOf_tns1_Sequence");
\r
207 cachedSerQNames.add(qName);
\r
208 cls = vamsas.objects.simple.Sequence[].class;
\r
209 cachedSerClasses.add(cls);
\r
210 cachedSerFactories.add(arraysf);
\r
211 cachedDeserFactories.add(arraydf);
\r
213 qName = new javax.xml.namespace.QName("simple.objects.vamsas",
\r
214 "SeqSearchResult");
\r
215 cachedSerQNames.add(qName);
\r
216 cls = vamsas.objects.simple.SeqSearchResult.class;
\r
217 cachedSerClasses.add(cls);
\r
218 cachedSerFactories.add(beansf);
\r
219 cachedDeserFactories.add(beandf);
\r
221 qName = new javax.xml.namespace.QName("simple.objects.vamsas",
\r
223 cachedSerQNames.add(qName);
\r
224 cls = vamsas.objects.simple.SequenceSet.class;
\r
225 cachedSerClasses.add(cls);
\r
226 cachedSerFactories.add(beansf);
\r
227 cachedDeserFactories.add(beandf);
\r
231 protected org.apache.axis.client.Call createCall()
\r
232 throws java.rmi.RemoteException
\r
236 org.apache.axis.client.Call _call = (org.apache.axis.client.Call) super.service
\r
238 if (super.maintainSessionSet)
\r
240 _call.setMaintainSession(super.maintainSession);
\r
242 if (super.cachedUsername != null)
\r
244 _call.setUsername(super.cachedUsername);
\r
246 if (super.cachedPassword != null)
\r
248 _call.setPassword(super.cachedPassword);
\r
250 if (super.cachedEndpoint != null)
\r
252 _call.setTargetEndpointAddress(super.cachedEndpoint);
\r
254 if (super.cachedTimeout != null)
\r
256 _call.setTimeout(super.cachedTimeout);
\r
258 if (super.cachedPortName != null)
\r
260 _call.setPortName(super.cachedPortName);
\r
262 java.util.Enumeration keys = super.cachedProperties.keys();
\r
263 while (keys.hasMoreElements())
\r
265 java.lang.String key = (java.lang.String) keys.nextElement();
\r
266 _call.setProperty(key, super.cachedProperties.get(key));
\r
268 // All the type mapping information is registered
\r
269 // when the first call is made.
\r
270 // The type mapping information is actually registered in
\r
271 // the TypeMappingRegistry of the service, which
\r
272 // is the reason why registration is only needed for the first call.
\r
273 synchronized (this)
\r
277 // must set encoding style before registering serializers
\r
279 .setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
\r
280 _call.setEncodingStyle(org.apache.axis.Constants.URI_SOAP11_ENC);
\r
281 for (int i = 0; i < cachedSerFactories.size(); ++i)
\r
283 java.lang.Class cls = (java.lang.Class) cachedSerClasses.get(i);
\r
284 javax.xml.namespace.QName qName = (javax.xml.namespace.QName) cachedSerQNames
\r
286 java.lang.Class sf = (java.lang.Class) cachedSerFactories
\r
288 java.lang.Class df = (java.lang.Class) cachedDeserFactories
\r
290 _call.registerTypeMapping(cls, qName, sf, df, false);
\r
295 } catch (java.lang.Throwable _t)
\r
297 throw new org.apache.axis.AxisFault(
\r
298 "Failure trying to get the Call object", _t);
\r
302 public java.lang.String getDatabase() throws java.rmi.RemoteException
\r
304 if (super.cachedEndpoint == null)
\r
306 throw new org.apache.axis.NoEndPointException();
\r
308 org.apache.axis.client.Call _call = createCall();
\r
309 _call.setOperation(_operations[0]);
\r
310 _call.setUseSOAPAction(true);
\r
311 _call.setSOAPActionURI("");
\r
313 .setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
\r
314 _call.setOperationName(new javax.xml.namespace.QName("vamsas",
\r
317 setRequestHeaders(_call);
\r
318 setAttachments(_call);
\r
319 java.lang.Object _resp = _call.invoke(new java.lang.Object[]
\r
322 if (_resp instanceof java.rmi.RemoteException)
\r
324 throw (java.rmi.RemoteException) _resp;
\r
328 extractAttachments(_call);
\r
331 return (java.lang.String) _resp;
\r
332 } catch (java.lang.Exception _exception)
\r
334 return (java.lang.String) org.apache.axis.utils.JavaUtils.convert(
\r
335 _resp, java.lang.String.class);
\r
340 public vamsas.objects.simple.SeqSearchResult getResult(
\r
341 java.lang.String job_id) throws java.rmi.RemoteException
\r
343 if (super.cachedEndpoint == null)
\r
345 throw new org.apache.axis.NoEndPointException();
\r
347 org.apache.axis.client.Call _call = createCall();
\r
348 _call.setOperation(_operations[1]);
\r
349 _call.setUseSOAPAction(true);
\r
350 _call.setSOAPActionURI("");
\r
352 .setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
\r
353 _call.setOperationName(new javax.xml.namespace.QName("vamsas",
\r
356 setRequestHeaders(_call);
\r
357 setAttachments(_call);
\r
358 java.lang.Object _resp = _call.invoke(new java.lang.Object[]
\r
361 if (_resp instanceof java.rmi.RemoteException)
\r
363 throw (java.rmi.RemoteException) _resp;
\r
367 extractAttachments(_call);
\r
370 return (vamsas.objects.simple.SeqSearchResult) _resp;
\r
371 } catch (java.lang.Exception _exception)
\r
373 return (vamsas.objects.simple.SeqSearchResult) org.apache.axis.utils.JavaUtils
\r
374 .convert(_resp, vamsas.objects.simple.SeqSearchResult.class);
\r
379 public vamsas.objects.simple.WsJobId psearch(
\r
380 vamsas.objects.simple.Alignment al, java.lang.String database)
\r
381 throws java.rmi.RemoteException
\r
383 if (super.cachedEndpoint == null)
\r
385 throw new org.apache.axis.NoEndPointException();
\r
387 org.apache.axis.client.Call _call = createCall();
\r
388 _call.setOperation(_operations[2]);
\r
389 _call.setUseSOAPAction(true);
\r
390 _call.setSOAPActionURI("");
\r
392 .setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
\r
393 _call.setOperationName(new javax.xml.namespace.QName("vamsas",
\r
396 setRequestHeaders(_call);
\r
397 setAttachments(_call);
\r
398 java.lang.Object _resp = _call.invoke(new java.lang.Object[]
\r
401 if (_resp instanceof java.rmi.RemoteException)
\r
403 throw (java.rmi.RemoteException) _resp;
\r
407 extractAttachments(_call);
\r
410 return (vamsas.objects.simple.WsJobId) _resp;
\r
411 } catch (java.lang.Exception _exception)
\r
413 return (vamsas.objects.simple.WsJobId) org.apache.axis.utils.JavaUtils
\r
414 .convert(_resp, vamsas.objects.simple.WsJobId.class);
\r
419 public vamsas.objects.simple.WsJobId search(
\r
420 vamsas.objects.simple.Sequence s, java.lang.String database)
\r
421 throws java.rmi.RemoteException
\r
423 if (super.cachedEndpoint == null)
\r
425 throw new org.apache.axis.NoEndPointException();
\r
427 org.apache.axis.client.Call _call = createCall();
\r
428 _call.setOperation(_operations[3]);
\r
429 _call.setUseSOAPAction(true);
\r
430 _call.setSOAPActionURI("");
\r
432 .setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
\r
434 .setOperationName(new javax.xml.namespace.QName("vamsas",
\r
437 setRequestHeaders(_call);
\r
438 setAttachments(_call);
\r
439 java.lang.Object _resp = _call.invoke(new java.lang.Object[]
\r
442 if (_resp instanceof java.rmi.RemoteException)
\r
444 throw (java.rmi.RemoteException) _resp;
\r
448 extractAttachments(_call);
\r
451 return (vamsas.objects.simple.WsJobId) _resp;
\r
452 } catch (java.lang.Exception _exception)
\r
454 return (vamsas.objects.simple.WsJobId) org.apache.axis.utils.JavaUtils
\r
455 .convert(_resp, vamsas.objects.simple.WsJobId.class);
\r
460 public vamsas.objects.simple.WsJobId cancel(java.lang.String jobId)
\r
461 throws java.rmi.RemoteException
\r
463 if (super.cachedEndpoint == null)
\r
465 throw new org.apache.axis.NoEndPointException();
\r
467 org.apache.axis.client.Call _call = createCall();
\r
468 _call.setOperation(_operations[4]);
\r
469 _call.setUseSOAPAction(true);
\r
470 _call.setSOAPActionURI("");
\r
472 .setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
\r
474 .setOperationName(new javax.xml.namespace.QName("vamsas",
\r
477 setRequestHeaders(_call);
\r
478 setAttachments(_call);
\r
479 java.lang.Object _resp = _call.invoke(new java.lang.Object[]
\r
482 if (_resp instanceof java.rmi.RemoteException)
\r
484 throw (java.rmi.RemoteException) _resp;
\r
488 extractAttachments(_call);
\r
491 return (vamsas.objects.simple.WsJobId) _resp;
\r
492 } catch (java.lang.Exception _exception)
\r
494 return (vamsas.objects.simple.WsJobId) org.apache.axis.utils.JavaUtils
\r
495 .convert(_resp, vamsas.objects.simple.WsJobId.class);
\r