2 * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3 * Copyright (C) $$Year-Rel$$ The Jalview Authors
5 * This file is part of Jalview.
7 * Jalview is free software: you can redistribute it and/or
8 * modify it under the terms of the GNU General Public License
9 * as published by the Free Software Foundation, either version 3
10 * of the License, or (at your option) any later version.
12 * Jalview is distributed in the hope that it will be useful, but
13 * WITHOUT ANY WARRANTY; without even the implied warranty
14 * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15 * PURPOSE. See the GNU General Public License for more details.
17 * You should have received a copy of the GNU General Public License
18 * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19 * The Jalview Authors are detailed in the 'AUTHORS' file.
23 public class SeqSearchServiceSoapBindingStub
24 extends org.apache.axis.client.Stub implements ext.vamsas.SeqSearchI
26 private java.util.Vector cachedSerClasses = new java.util.Vector();
28 private java.util.Vector cachedSerQNames = new java.util.Vector();
30 private java.util.Vector cachedSerFactories = new java.util.Vector();
32 private java.util.Vector cachedDeserFactories = new java.util.Vector();
34 static org.apache.axis.description.OperationDesc[] _operations;
38 _operations = new org.apache.axis.description.OperationDesc[5];
39 _initOperationDesc1();
42 private static void _initOperationDesc1()
44 org.apache.axis.description.OperationDesc oper;
45 oper = new org.apache.axis.description.OperationDesc();
46 oper.setName("getDatabase");
47 oper.setReturnType(new javax.xml.namespace.QName(
48 "http://www.w3.org/2001/XMLSchema", "string"));
49 oper.setReturnClass(java.lang.String.class);
51 new javax.xml.namespace.QName("", "getDatabaseReturn"));
52 oper.setStyle(org.apache.axis.constants.Style.RPC);
53 oper.setUse(org.apache.axis.constants.Use.ENCODED);
54 _operations[0] = oper;
56 oper = new org.apache.axis.description.OperationDesc();
57 oper.setName("getResult");
58 oper.addParameter(new javax.xml.namespace.QName("", "job_id"),
59 new javax.xml.namespace.QName(
60 "http://www.w3.org/2001/XMLSchema", "string"),
61 java.lang.String.class,
62 org.apache.axis.description.ParameterDesc.IN, false, false);
63 oper.setReturnType(new javax.xml.namespace.QName(
64 "simple.objects.vamsas", "SeqSearchResult"));
65 oper.setReturnClass(vamsas.objects.simple.SeqSearchResult.class);
67 new javax.xml.namespace.QName("", "getResultReturn"));
68 oper.setStyle(org.apache.axis.constants.Style.RPC);
69 oper.setUse(org.apache.axis.constants.Use.ENCODED);
70 _operations[1] = oper;
72 oper = new org.apache.axis.description.OperationDesc();
73 oper.setName("psearch");
74 oper.addParameter(new javax.xml.namespace.QName("", "al"),
75 new javax.xml.namespace.QName("simple.objects.vamsas",
77 vamsas.objects.simple.Alignment.class,
78 org.apache.axis.description.ParameterDesc.IN, false, false);
79 oper.addParameter(new javax.xml.namespace.QName("", "database"),
80 new javax.xml.namespace.QName(
81 "http://www.w3.org/2001/XMLSchema", "string"),
82 java.lang.String.class,
83 org.apache.axis.description.ParameterDesc.IN, false, false);
84 oper.setReturnType(new javax.xml.namespace.QName(
85 "simple.objects.vamsas", "WsJobId"));
86 oper.setReturnClass(vamsas.objects.simple.WsJobId.class);
87 oper.setReturnQName(new javax.xml.namespace.QName("", "psearchReturn"));
88 oper.setStyle(org.apache.axis.constants.Style.RPC);
89 oper.setUse(org.apache.axis.constants.Use.ENCODED);
90 _operations[2] = oper;
92 oper = new org.apache.axis.description.OperationDesc();
93 oper.setName("search");
94 oper.addParameter(new javax.xml.namespace.QName("", "s"),
95 new javax.xml.namespace.QName("simple.objects.vamsas",
97 vamsas.objects.simple.Sequence.class,
98 org.apache.axis.description.ParameterDesc.IN, false, false);
99 oper.addParameter(new javax.xml.namespace.QName("", "database"),
100 new javax.xml.namespace.QName(
101 "http://www.w3.org/2001/XMLSchema", "string"),
102 java.lang.String.class,
103 org.apache.axis.description.ParameterDesc.IN, false, false);
104 oper.setReturnType(new javax.xml.namespace.QName(
105 "simple.objects.vamsas", "WsJobId"));
106 oper.setReturnClass(vamsas.objects.simple.WsJobId.class);
107 oper.setReturnQName(new javax.xml.namespace.QName("", "searchReturn"));
108 oper.setStyle(org.apache.axis.constants.Style.RPC);
109 oper.setUse(org.apache.axis.constants.Use.ENCODED);
110 _operations[3] = oper;
112 oper = new org.apache.axis.description.OperationDesc();
113 oper.setName("cancel");
114 oper.addParameter(new javax.xml.namespace.QName("", "jobId"),
115 new javax.xml.namespace.QName(
116 "http://www.w3.org/2001/XMLSchema", "string"),
117 java.lang.String.class,
118 org.apache.axis.description.ParameterDesc.IN, false, false);
119 oper.setReturnType(new javax.xml.namespace.QName(
120 "simple.objects.vamsas", "WsJobId"));
121 oper.setReturnClass(vamsas.objects.simple.WsJobId.class);
122 oper.setReturnQName(new javax.xml.namespace.QName("", "cancelReturn"));
123 oper.setStyle(org.apache.axis.constants.Style.RPC);
124 oper.setUse(org.apache.axis.constants.Use.ENCODED);
125 _operations[4] = oper;
129 public SeqSearchServiceSoapBindingStub() throws org.apache.axis.AxisFault
134 public SeqSearchServiceSoapBindingStub(java.net.URL endpointURL,
135 javax.xml.rpc.Service service) throws org.apache.axis.AxisFault
138 super.cachedEndpoint = endpointURL;
141 public SeqSearchServiceSoapBindingStub(javax.xml.rpc.Service service)
142 throws org.apache.axis.AxisFault
146 super.service = new org.apache.axis.client.Service();
150 super.service = service;
153 javax.xml.namespace.QName qName;
154 java.lang.Class beansf = org.apache.axis.encoding.ser.BeanSerializerFactory.class;
155 java.lang.Class beandf = org.apache.axis.encoding.ser.BeanDeserializerFactory.class;
156 java.lang.Class enumsf = org.apache.axis.encoding.ser.EnumSerializerFactory.class;
157 java.lang.Class enumdf = org.apache.axis.encoding.ser.EnumDeserializerFactory.class;
158 java.lang.Class arraysf = org.apache.axis.encoding.ser.ArraySerializerFactory.class;
159 java.lang.Class arraydf = org.apache.axis.encoding.ser.ArrayDeserializerFactory.class;
160 java.lang.Class simplesf = org.apache.axis.encoding.ser.SimpleSerializerFactory.class;
161 java.lang.Class simpledf = org.apache.axis.encoding.ser.SimpleDeserializerFactory.class;
162 java.lang.Class simplelistsf = org.apache.axis.encoding.ser.SimpleListSerializerFactory.class;
163 java.lang.Class simplelistdf = org.apache.axis.encoding.ser.SimpleListDeserializerFactory.class;
164 qName = new javax.xml.namespace.QName("simple.objects.vamsas",
166 cachedSerQNames.add(qName);
167 cls = vamsas.objects.simple.Result.class;
168 cachedSerClasses.add(cls);
169 cachedSerFactories.add(beansf);
170 cachedDeserFactories.add(beandf);
172 qName = new javax.xml.namespace.QName("simple.objects.vamsas",
174 cachedSerQNames.add(qName);
175 cls = vamsas.objects.simple.WsJobId.class;
176 cachedSerClasses.add(cls);
177 cachedSerFactories.add(beansf);
178 cachedDeserFactories.add(beandf);
180 qName = new javax.xml.namespace.QName("http://simple.objects.vamsas",
182 cachedSerQNames.add(qName);
183 cls = vamsas.objects.simple.Object.class;
184 cachedSerClasses.add(cls);
185 cachedSerFactories.add(beansf);
186 cachedDeserFactories.add(beandf);
188 qName = new javax.xml.namespace.QName("vamsas", "ArrayOf_xsd_string");
189 cachedSerQNames.add(qName);
190 cls = java.lang.String[].class;
191 cachedSerClasses.add(cls);
192 cachedSerFactories.add(arraysf);
193 cachedDeserFactories.add(arraydf);
195 qName = new javax.xml.namespace.QName("simple.objects.vamsas",
197 cachedSerQNames.add(qName);
198 cls = vamsas.objects.simple.Alignment.class;
199 cachedSerClasses.add(cls);
200 cachedSerFactories.add(beansf);
201 cachedDeserFactories.add(beandf);
203 qName = new javax.xml.namespace.QName("simple.objects.vamsas",
205 cachedSerQNames.add(qName);
206 cls = vamsas.objects.simple.Sequence.class;
207 cachedSerClasses.add(cls);
208 cachedSerFactories.add(beansf);
209 cachedDeserFactories.add(beandf);
211 qName = new javax.xml.namespace.QName("vamsas",
212 "ArrayOf_tns1_Sequence");
213 cachedSerQNames.add(qName);
214 cls = vamsas.objects.simple.Sequence[].class;
215 cachedSerClasses.add(cls);
216 cachedSerFactories.add(arraysf);
217 cachedDeserFactories.add(arraydf);
219 qName = new javax.xml.namespace.QName("simple.objects.vamsas",
221 cachedSerQNames.add(qName);
222 cls = vamsas.objects.simple.SeqSearchResult.class;
223 cachedSerClasses.add(cls);
224 cachedSerFactories.add(beansf);
225 cachedDeserFactories.add(beandf);
227 qName = new javax.xml.namespace.QName("simple.objects.vamsas",
229 cachedSerQNames.add(qName);
230 cls = vamsas.objects.simple.SequenceSet.class;
231 cachedSerClasses.add(cls);
232 cachedSerFactories.add(beansf);
233 cachedDeserFactories.add(beandf);
237 protected org.apache.axis.client.Call createCall()
238 throws java.rmi.RemoteException
242 org.apache.axis.client.Call _call = (org.apache.axis.client.Call) super.service
244 if (super.maintainSessionSet)
246 _call.setMaintainSession(super.maintainSession);
248 if (super.cachedUsername != null)
250 _call.setUsername(super.cachedUsername);
252 if (super.cachedPassword != null)
254 _call.setPassword(super.cachedPassword);
256 if (super.cachedEndpoint != null)
258 _call.setTargetEndpointAddress(super.cachedEndpoint);
260 if (super.cachedTimeout != null)
262 _call.setTimeout(super.cachedTimeout);
264 if (super.cachedPortName != null)
266 _call.setPortName(super.cachedPortName);
268 java.util.Enumeration keys = super.cachedProperties.keys();
269 while (keys.hasMoreElements())
271 java.lang.String key = (java.lang.String) keys.nextElement();
272 _call.setProperty(key, super.cachedProperties.get(key));
274 // All the type mapping information is registered
275 // when the first call is made.
276 // The type mapping information is actually registered in
277 // the TypeMappingRegistry of the service, which
278 // is the reason why registration is only needed for the first call.
283 // must set encoding style before registering serializers
284 _call.setSOAPVersion(
285 org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
286 _call.setEncodingStyle(org.apache.axis.Constants.URI_SOAP11_ENC);
287 for (int i = 0; i < cachedSerFactories.size(); ++i)
289 java.lang.Class cls = (java.lang.Class) cachedSerClasses.get(i);
290 javax.xml.namespace.QName qName = (javax.xml.namespace.QName) cachedSerQNames
292 java.lang.Class sf = (java.lang.Class) cachedSerFactories
294 java.lang.Class df = (java.lang.Class) cachedDeserFactories
296 _call.registerTypeMapping(cls, qName, sf, df, false);
301 } catch (java.lang.Throwable _t)
303 throw new org.apache.axis.AxisFault(
304 "Failure trying to get the Call object", _t);
308 public java.lang.String getDatabase() throws java.rmi.RemoteException
310 if (super.cachedEndpoint == null)
312 throw new org.apache.axis.NoEndPointException();
314 org.apache.axis.client.Call _call = createCall();
315 _call.setOperation(_operations[0]);
316 _call.setUseSOAPAction(true);
317 _call.setSOAPActionURI("");
318 _call.setSOAPVersion(
319 org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
320 _call.setOperationName(
321 new javax.xml.namespace.QName("vamsas", "getDatabase"));
323 setRequestHeaders(_call);
324 setAttachments(_call);
325 java.lang.Object _resp = _call.invoke(new java.lang.Object[] {});
327 if (_resp instanceof java.rmi.RemoteException)
329 throw (java.rmi.RemoteException) _resp;
333 extractAttachments(_call);
336 return (java.lang.String) _resp;
337 } catch (java.lang.Exception _exception)
339 return (java.lang.String) org.apache.axis.utils.JavaUtils
340 .convert(_resp, java.lang.String.class);
345 public vamsas.objects.simple.SeqSearchResult getResult(
346 java.lang.String job_id) throws java.rmi.RemoteException
348 if (super.cachedEndpoint == null)
350 throw new org.apache.axis.NoEndPointException();
352 org.apache.axis.client.Call _call = createCall();
353 _call.setOperation(_operations[1]);
354 _call.setUseSOAPAction(true);
355 _call.setSOAPActionURI("");
356 _call.setSOAPVersion(
357 org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
358 _call.setOperationName(
359 new javax.xml.namespace.QName("vamsas", "getResult"));
361 setRequestHeaders(_call);
362 setAttachments(_call);
363 java.lang.Object _resp = _call
364 .invoke(new java.lang.Object[]
367 if (_resp instanceof java.rmi.RemoteException)
369 throw (java.rmi.RemoteException) _resp;
373 extractAttachments(_call);
376 return (vamsas.objects.simple.SeqSearchResult) _resp;
377 } catch (java.lang.Exception _exception)
379 return (vamsas.objects.simple.SeqSearchResult) org.apache.axis.utils.JavaUtils
381 vamsas.objects.simple.SeqSearchResult.class);
386 public vamsas.objects.simple.WsJobId psearch(
387 vamsas.objects.simple.Alignment al, java.lang.String database)
388 throws java.rmi.RemoteException
390 if (super.cachedEndpoint == null)
392 throw new org.apache.axis.NoEndPointException();
394 org.apache.axis.client.Call _call = createCall();
395 _call.setOperation(_operations[2]);
396 _call.setUseSOAPAction(true);
397 _call.setSOAPActionURI("");
398 _call.setSOAPVersion(
399 org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
400 _call.setOperationName(
401 new javax.xml.namespace.QName("vamsas", "psearch"));
403 setRequestHeaders(_call);
404 setAttachments(_call);
405 java.lang.Object _resp = _call
406 .invoke(new java.lang.Object[]
409 if (_resp instanceof java.rmi.RemoteException)
411 throw (java.rmi.RemoteException) _resp;
415 extractAttachments(_call);
418 return (vamsas.objects.simple.WsJobId) _resp;
419 } catch (java.lang.Exception _exception)
421 return (vamsas.objects.simple.WsJobId) org.apache.axis.utils.JavaUtils
422 .convert(_resp, vamsas.objects.simple.WsJobId.class);
427 public vamsas.objects.simple.WsJobId search(
428 vamsas.objects.simple.Sequence s, java.lang.String database)
429 throws java.rmi.RemoteException
431 if (super.cachedEndpoint == null)
433 throw new org.apache.axis.NoEndPointException();
435 org.apache.axis.client.Call _call = createCall();
436 _call.setOperation(_operations[3]);
437 _call.setUseSOAPAction(true);
438 _call.setSOAPActionURI("");
439 _call.setSOAPVersion(
440 org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
441 _call.setOperationName(
442 new javax.xml.namespace.QName("vamsas", "search"));
444 setRequestHeaders(_call);
445 setAttachments(_call);
446 java.lang.Object _resp = _call
447 .invoke(new java.lang.Object[]
450 if (_resp instanceof java.rmi.RemoteException)
452 throw (java.rmi.RemoteException) _resp;
456 extractAttachments(_call);
459 return (vamsas.objects.simple.WsJobId) _resp;
460 } catch (java.lang.Exception _exception)
462 return (vamsas.objects.simple.WsJobId) org.apache.axis.utils.JavaUtils
463 .convert(_resp, vamsas.objects.simple.WsJobId.class);
468 public vamsas.objects.simple.WsJobId cancel(java.lang.String jobId)
469 throws java.rmi.RemoteException
471 if (super.cachedEndpoint == null)
473 throw new org.apache.axis.NoEndPointException();
475 org.apache.axis.client.Call _call = createCall();
476 _call.setOperation(_operations[4]);
477 _call.setUseSOAPAction(true);
478 _call.setSOAPActionURI("");
479 _call.setSOAPVersion(
480 org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
481 _call.setOperationName(
482 new javax.xml.namespace.QName("vamsas", "cancel"));
484 setRequestHeaders(_call);
485 setAttachments(_call);
486 java.lang.Object _resp = _call.invoke(new java.lang.Object[] { jobId });
488 if (_resp instanceof java.rmi.RemoteException)
490 throw (java.rmi.RemoteException) _resp;
494 extractAttachments(_call);
497 return (vamsas.objects.simple.WsJobId) _resp;
498 } catch (java.lang.Exception _exception)
500 return (vamsas.objects.simple.WsJobId) org.apache.axis.utils.JavaUtils
501 .convert(_resp, vamsas.objects.simple.WsJobId.class);