2 * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
3 * Copyright (C) 2014 The Jalview Authors
5 * This file is part of Jalview.
7 * Jalview is free software: you can redistribute it and/or
8 * modify it under the terms of the GNU General Public License
9 * as published by the Free Software Foundation, either version 3
10 * of the License, or (at your option) any later version.
12 * Jalview is distributed in the hope that it will be useful, but
13 * WITHOUT ANY WARRANTY; without even the implied warranty
14 * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15 * PURPOSE. See the GNU General Public License for more details.
17 * You should have received a copy of the GNU General Public License
18 * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19 * The Jalview Authors are detailed in the 'AUTHORS' file.
24 * prototype abstract controller for a Jalview alignment view
28 * All operations should return true if the view has changed as a result
33 public interface AlignViewControllerI<ViewportI>
36 public boolean makeGroupsFromSelection();
38 public boolean createGroup();
40 public boolean unGroup();
42 public boolean deleteGroups();
44 public void setViewportAndAlignmentPanel(AlignViewportI viewport,
45 AlignmentViewPanel alignPanel);
48 * Mark columns in the current column selection according to positions of
52 * - when set, mark all but columns containing given type
53 * @param extendCurrent
54 * - when set, do not clear existing column selection
56 * - rather than explicitly set, toggle selection state
58 * - feature type string
59 * @return true if operation affected state
61 boolean markColumnsContainingFeatures(boolean invert,
62 boolean extendCurrent, boolean clearColumns, String featureType);