2 * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
3 * Copyright (C) 2014 The Jalview Authors
5 * This file is part of Jalview.
7 * Jalview is free software: you can redistribute it and/or
8 * modify it under the terms of the GNU General Public License
9 * as published by the Free Software Foundation, either version 3
10 * of the License, or (at your option) any later version.
12 * Jalview is distributed in the hope that it will be useful, but
13 * WITHOUT ANY WARRANTY; without even the implied warranty
14 * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15 * PURPOSE. See the GNU General Public License for more details.
17 * You should have received a copy of the GNU General Public License
18 * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19 * The Jalview Authors are detailed in the 'AUTHORS' file.
23 import jalview.datamodel.AlignmentI;
24 import jalview.structure.StructureSelectionManager;
27 * abstract interface implemented by alignment panels holding an alignment view
32 public interface AlignmentViewPanel extends OOMHandlerI
35 AlignmentI getAlignment();
37 StructureSelectionManager getStructureSelectionManager();
40 * repaint the alignment view after a datamodel update.
42 * @param updateOverview
43 * - if true, the overview panel will also be updated and repainted
46 void paintAlignment(boolean updateOverview);
49 * automatically adjust annotation panel height for new annotation whilst
50 * ensuring the alignment is still visible.
52 void adjustAnnotationHeight();